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Introduction of SARS-CoV-2 C.37 (WHO VOI lambda) in the Sao Paulo State, Southeast Brazil.
Kashima S, Slavov SN, Giovanetti M, Rodrigues ES, Patané JSL, Viala VL, Santos EV, Evaristo M, de Lima LPO, Martins AJ, Dos Santos Barros CR, Marqueze EC, Garibaldi PMM, Ferreira NN, Moraes GR, Brassaloti RA, Cassano RLRC, Mariani PDSC, Kitajima JP, Schlesinger D, Bezerra RS, Assato PA, da Costa FAS, Poleti MD, Lesbon JCC, Mattos EC, Banho CA, Sacchetto L, Grotto RMT, Souza-Neto JA, Fonseca V, de Alcantara LCJ, Nogueira ML, Fukumasu H, Coutinho LL, Borges M, Calado RT, Elias MC, Sampaio SC, Covas DT. Kashima S, et al. Among authors: patane jsl. J Med Virol. 2022 Mar;94(3):1206-1211. doi: 10.1002/jmv.27389. Epub 2021 Oct 20. J Med Virol. 2022. PMID: 34647634 Free PMC article.
Genomic monitoring unveil the early detection of the SARS-CoV-2 B.1.351 (beta) variant (20H/501Y.V2) in Brazil.
Slavov SN, Patané JSL, Bezerra RDS, Giovanetti M, Fonseca V, Martins AJ, Viala VL, Rodrigues ES, Santos EV, Barros CRS, Marqueze EC, Santos B, Aburjaile F, Neto RM, Moretti DB, Haddad R, Calado RT, Kitajima JP, Freitas E, Schlesinger D, Junior de Alcantara LC, Elias MC, Sampaio SC, Kashima S, Covas DT. Slavov SN, et al. Among authors: patane jsl. J Med Virol. 2021 Dec;93(12):6782-6787. doi: 10.1002/jmv.27190. Epub 2021 Jul 19. J Med Virol. 2021. PMID: 34241897 Free PMC article.
A comparative genomic analysis of Xanthomonas arboricola pv. juglandis strains reveal hallmarks of mobile genetic elements in the adaptation and accelerated evolution of virulence.
Assis RAB, Varani AM, Sagawa CHD, Patané JSL, Setubal JC, Uceda-Campos G, da Silva AM, Zaini PA, Almeida NF, Moreira LM, Dandekar AM. Assis RAB, et al. Among authors: patane jsl. Genomics. 2021 Jul;113(4):2513-2525. doi: 10.1016/j.ygeno.2021.06.003. Epub 2021 Jun 3. Genomics. 2021. PMID: 34089784 Free article.
Origin and diversification of Xanthomonas citri subsp. citri pathotypes revealed by inclusive phylogenomic, dating, and biogeographic analyses.
Patané JSL, Martins J Jr, Rangel LT, Belasque J, Digiampietri LA, Facincani AP, Ferreira RM, Jaciani FJ, Zhang Y, Varani AM, Almeida NF, Wang N, Ferro JA, Moreira LM, Setubal JC. Patané JSL, et al. BMC Genomics. 2019 Sep 9;20(1):700. doi: 10.1186/s12864-019-6007-4. BMC Genomics. 2019. PMID: 31500575 Free PMC article.
Identification and analysis of seven effector protein families with different adaptive and evolutionary histories in plant-associated members of the Xanthomonadaceae.
Assis RAB, Polloni LC, Patané JSL, Thakur S, Felestrino ÉB, Diaz-Caballero J, Digiampietri LA, Goulart LR, Almeida NF, Nascimento R, Dandekar AM, Zaini PA, Setubal JC, Guttman DS, Moreira LM. Assis RAB, et al. Among authors: patane jsl. Sci Rep. 2017 Nov 23;7(1):16133. doi: 10.1038/s41598-017-16325-1. Sci Rep. 2017. PMID: 29170530 Free PMC article.
Phylogenomics.
Patané JSL, Martins J Jr, Setubal JC. Patané JSL, et al. Methods Mol Biol. 2018;1704:103-187. doi: 10.1007/978-1-4939-7463-4_5. Methods Mol Biol. 2018. PMID: 29277865 Review.
Worldwide Phylogenetic Distributions and Population Dynamics of the Genus Histoplasma.
Teixeira Mde M, Patané JS, Taylor ML, Gómez BL, Theodoro RC, de Hoog S, Engelthaler DM, Zancopé-Oliveira RM, Felipe MS, Barker BM. Teixeira Mde M, et al. PLoS Negl Trop Dis. 2016 Jun 1;10(6):e0004732. doi: 10.1371/journal.pntd.0004732. eCollection 2016 Jun. PLoS Negl Trop Dis. 2016. PMID: 27248851 Free PMC article.
Analyses of Seven New Genomes of Xanthomonas citri pv. aurantifolii Strains, Causative Agents of Citrus Canker B and C, Show a Reduced Repertoire of Pathogenicity-Related Genes.
Fonseca NP, Patané JSL, Varani AM, Felestrino ÉB, Caneschi WL, Sanchez AB, Cordeiro IF, Lemes CGC, Assis RAB, Garcia CCM, Belasque J Jr, Martins J Jr, Facincani AP, Ferreira RM, Jaciani FJ, de Almeida NF, Ferro JA, Moreira LM, Setubal JC. Fonseca NP, et al. Among authors: patane jsl. Front Microbiol. 2019 Oct 11;10:2361. doi: 10.3389/fmicb.2019.02361. eCollection 2019. Front Microbiol. 2019. PMID: 31681223 Free PMC article.
Patterns and processes of Mycobacterium bovis evolution revealed by phylogenomic analyses.
Patané JS, Martins J, Beatriz Castelão A, Nishibe C, Montera L, Bigi F, Zumárraga MJ, Cataldi AA, Fonseca Junior A, Roxo E, Luiza A, Osório AR, Jorge Ufms KS, Thacker TC, Almeida NF, Araújo FR, Setubal JC. Patané JS, et al. Genome Biol Evol. 2017 Feb 13;9(3):521-35. doi: 10.1093/gbe/evx022. Online ahead of print. Genome Biol Evol. 2017. PMID: 28201585 Free PMC article.
34 results