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Comprehensive characterization of single-cell full-length isoforms in human and mouse with long-read sequencing.
Tian L, Jabbari JS, Thijssen R, Gouil Q, Amarasinghe SL, Voogd O, Kariyawasam H, Du MRM, Schuster J, Wang C, Su S, Dong X, Law CW, Lucattini A, Prawer YDJ, Collar-Fernández C, Chung JD, Naim T, Chan A, Ly CH, Lynch GS, Ryall JG, Anttila CJA, Peng H, Anderson MA, Flensburg C, Majewski I, Roberts AW, Huang DCS, Clark MB, Ritchie ME. Tian L, et al. Among authors: su s. Genome Biol. 2021 Nov 11;22(1):310. doi: 10.1186/s13059-021-02525-6. Genome Biol. 2021. PMID: 34763716 Free PMC article.
RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR.
Law CW, Alhamdoosh M, Su S, Dong X, Tian L, Smyth GK, Ritchie ME. Law CW, et al. Among authors: su s. F1000Res. 2016 Jun 17;5:ISCB Comm J-1408. doi: 10.12688/f1000research.9005.3. eCollection 2016. F1000Res. 2016. PMID: 27441086 Free PMC article.
Deciphering the Innate Lymphoid Cell Transcriptional Program.
Seillet C, Mielke LA, Amann-Zalcenstein DB, Su S, Gao J, Almeida FF, Shi W, Ritchie ME, Naik SH, Huntington ND, Carotta S, Belz GT. Seillet C, et al. Among authors: su s. Cell Rep. 2016 Oct 4;17(2):436-447. doi: 10.1016/j.celrep.2016.09.025. Cell Rep. 2016. PMID: 27705792 Free article.
Glimma: interactive graphics for gene expression analysis.
Su S, Law CW, Ah-Cann C, Asselin-Labat ML, Blewitt ME, Ritchie ME. Su S, et al. Bioinformatics. 2017 Jul 1;33(13):2050-2052. doi: 10.1093/bioinformatics/btx094. Bioinformatics. 2017. PMID: 28203714 Free PMC article.
AVAILABILITY AND IMPLEMENTATION: The Glimma R package is available from http://bioconductor.org/packages/Glimma/ . CONTACT: su.s@wehi.edu.au , law@wehi.edu.au or mritchie@wehi.edu.au....
AVAILABILITY AND IMPLEMENTATION: The Glimma R package is available from http://bioconductor.org/packages/Glimma/ . CONTACT: su.s …
6,329 results