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Full-length transcript sequencing of human and mouse cerebral cortex identifies widespread isoform diversity and alternative splicing.
Leung SK, Jeffries AR, Castanho I, Jordan BT, Moore K, Davies JP, Dempster EL, Bray NJ, O'Neill P, Tseng E, Ahmed Z, Collier DA, Jeffery ED, Prabhakar S, Schalkwyk L, Jops C, Gandal MJ, Sheynkman GM, Hannon E, Mill J. Leung SK, et al. Among authors: jordan bt. Cell Rep. 2021 Nov 16;37(7):110022. doi: 10.1016/j.celrep.2021.110022. Cell Rep. 2021. PMID: 34788620 Free PMC article.
Enhanced protein isoform characterization through long-read proteogenomics.
Miller RM, Jordan BT, Mehlferber MM, Jeffery ED, Chatzipantsiou C, Kaur S, Millikin RJ, Dai Y, Tiberi S, Castaldi PJ, Shortreed MR, Luckey CJ, Conesa A, Smith LM, Deslattes Mays A, Sheynkman GM. Miller RM, et al. Among authors: jordan bt. Genome Biol. 2022 Mar 3;23(1):69. doi: 10.1186/s13059-022-02624-y. Genome Biol. 2022. PMID: 35241129 Free PMC article.
IS-PRM-based peptide targeting informed by long-read sequencing for alternative proteome detection.
Korchak JA, Jeffery ED, Bandyopadhyay S, Jordan BT, Lehe M, Watts EF, Fenix A, Wilhelm M, Sheynkman GM. Korchak JA, et al. Among authors: jordan bt. bioRxiv [Preprint]. 2024 Apr 1:2024.04.01.587549. doi: 10.1101/2024.04.01.587549. bioRxiv. 2024. Update in: J Am Soc Mass Spectrom. 2024 Nov 6;35(11):2614-2630. doi: 10.1021/jasms.4c00119 PMID: 38617311 Free PMC article. Updated. Preprint.
IsoBayes: a Bayesian approach for single-isoform proteomics inference.
Bollon J, Shortreed MR, Jordan BT, Miller R, Jeffery E, Cavalli A, Smith LM, Dewey C, Sheynkman GM, Tiberi S. Bollon J, et al. Among authors: jordan bt. bioRxiv [Preprint]. 2024 Jun 11:2024.06.10.598223. doi: 10.1101/2024.06.10.598223. bioRxiv. 2024. PMID: 38915658 Free PMC article. Preprint.
17 results