Stadler PF - Search Results

1

EpiDiverse Toolkit: a pipeline suite for the analysis of bisulfite sequencing data in ecological plant epigenetics.

Nunn A, Can SN, Otto C, Fasold M, Díez Rodríguez B, Fernández-Pozo N, Rensing SA, Stadler PF, Langenberger D. Nunn A, et al. Among authors: stadler pf. NAR Genom Bioinform. 2021 Nov 12;3(4):lqab106. doi: 10.1093/nargab/lqab106. eCollection 2021 Dec. NAR Genom Bioinform. 2021. PMID: 34805989 Free PMC article.

2

Evidence for human microRNA-offset RNAs in small RNA sequencing data.

Langenberger D, Bermudez-Santana C, Hertel J, Hoffmann S, Khaitovich P, Stadler PF. Langenberger D, et al. Among authors: stadler pf. Bioinformatics. 2009 Sep 15;25(18):2298-301. doi: 10.1093/bioinformatics/btp419. Epub 2009 Jul 6. Bioinformatics. 2009. PMID: 19584066

3

Fast mapping of short sequences with mismatches, insertions and deletions using index structures.

Hoffmann S, Otto C, Kurtz S, Sharma CM, Khaitovich P, Vogel J, Stadler PF, Hackermüller J. Hoffmann S, et al. Among authors: stadler pf. PLoS Comput Biol. 2009 Sep;5(9):e1000502. doi: 10.1371/journal.pcbi.1000502. Epub 2009 Sep 11. PLoS Comput Biol. 2009. PMID: 19750212 Free PMC article.

4

Identification and classification of small RNAs in transcriptome sequence data.

Langenberger D, Bermudez-Santana CI, Stadler PF, Hoffmann S. Langenberger D, et al. Among authors: stadler pf. Pac Symp Biocomput. 2010:80-7. doi: 10.1142/9789814295291_0010. Pac Symp Biocomput. 2010. PMID: 19908360 Free article.

5

G-stack modulated probe intensities on expression arrays - sequence corrections and signal calibration.

Fasold M, Stadler PF, Binder H. Fasold M, et al. Among authors: stadler pf. BMC Bioinformatics. 2010 Apr 27;11:207. doi: 10.1186/1471-2105-11-207. BMC Bioinformatics. 2010. PMID: 20423484 Free PMC article.

6

Traces of post-transcriptional RNA modifications in deep sequencing data.

Findeiss S, Langenberger D, Stadler PF, Hoffmann S. Findeiss S, et al. Among authors: stadler pf. Biol Chem. 2011 Apr;392(4):305-13. doi: 10.1515/BC.2011.043. Epub 2011 Feb 24. Biol Chem. 2011. PMID: 21345160

7

Fast local fragment chaining using sum-of-pair gap costs.

Otto C, Hoffmann S, Gorodkin J, Stadler PF. Otto C, et al. Among authors: stadler pf. Algorithms Mol Biol. 2011 Mar 18;6:4. doi: 10.1186/1748-7188-6-4. Algorithms Mol Biol. 2011. PMID: 21418573 Free PMC article.

8

DARIO: a ncRNA detection and analysis tool for next-generation sequencing experiments.

Fasold M, Langenberger D, Binder H, Stadler PF, Hoffmann S. Fasold M, et al. Among authors: stadler pf. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W112-7. doi: 10.1093/nar/gkr357. Epub 2011 May 27. Nucleic Acids Res. 2011. PMID: 21622957 Free PMC article.

9

deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns.

Langenberger D, Pundhir S, Ekstrøm CT, Stadler PF, Hoffmann S, Gorodkin J. Langenberger D, et al. Among authors: stadler pf. Bioinformatics. 2012 Jan 1;28(1):17-24. doi: 10.1093/bioinformatics/btr598. Epub 2011 Nov 3. Bioinformatics. 2012. PMID: 22053076 Free PMC article.

10

Fast and sensitive mapping of bisulfite-treated sequencing data.

Otto C, Stadler PF, Hoffmann S. Otto C, et al. Among authors: stadler pf. Bioinformatics. 2012 Jul 1;28(13):1698-704. doi: 10.1093/bioinformatics/bts254. Epub 2012 May 10. Bioinformatics. 2012. PMID: 22581174

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