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Fast nanopore sequencing data analysis with SLOW5.
Gamaarachchi H, Samarakoon H, Jenner SP, Ferguson JM, Amos TG, Hammond JM, Saadat H, Smith MA, Parameswaran S, Deveson IW. Gamaarachchi H, et al. Nat Biotechnol. 2022 Jul;40(7):1026-1029. doi: 10.1038/s41587-021-01147-4. Epub 2022 Jan 3. Nat Biotechnol. 2022. PMID: 34980914 Free PMC article.
Genopo: a nanopore sequencing analysis toolkit for portable Android devices.
Samarakoon H, Punchihewa S, Senanayake A, Hammond JM, Stevanovski I, Ferguson JM, Ragel R, Gamaarachchi H, Deveson IW. Samarakoon H, et al. Among authors: gamaarachchi h. Commun Biol. 2020 Sep 29;3(1):538. doi: 10.1038/s42003-020-01270-z. Commun Biol. 2020. PMID: 32994472 Free PMC article.
Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis.
Bull RA, Adikari TN, Ferguson JM, Hammond JM, Stevanovski I, Beukers AG, Naing Z, Yeang M, Verich A, Gamaarachchi H, Kim KW, Luciani F, Stelzer-Braid S, Eden JS, Rawlinson WD, van Hal SJ, Deveson IW. Bull RA, et al. Among authors: gamaarachchi h. Nat Commun. 2020 Dec 9;11(1):6272. doi: 10.1038/s41467-020-20075-6. Nat Commun. 2020. PMID: 33298935 Free PMC article.
Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable targeted nanopore sequencing.
Stevanovski I, Chintalaphani SR, Gamaarachchi H, Ferguson JM, Pineda SS, Scriba CK, Tchan M, Fung V, Ng K, Cortese A, Houlden H, Dobson-Stone C, Fitzpatrick L, Halliday G, Ravenscroft G, Davis MR, Laing NG, Fellner A, Kennerson M, Kumar KR, Deveson IW. Stevanovski I, et al. Among authors: gamaarachchi h. Sci Adv. 2022 Mar 4;8(9):eabm5386. doi: 10.1126/sciadv.abm5386. Epub 2022 Mar 4. Sci Adv. 2022. PMID: 35245110 Free PMC article.
21 results