Wu CT - Search Results

1

Comparative assessment and novel strategy on methods for imputing proteomics data.

Shen M, Chang YT, Wu CT, Parker SJ, Saylor G, Wang Y, Yu G, Van Eyk JE, Clarke R, Herrington DM, Wang Y. Shen M, et al. Among authors: wu ct. Sci Rep. 2022 Jan 20;12(1):1067. doi: 10.1038/s41598-022-04938-0. Sci Rep. 2022. PMID: 35058491 Free PMC article.

2

Asymmetric independence modeling identifies novel gene-environment interactions.

Yu G, Miller DJ, Wu CT, Hoffman EP, Liu C, Herrington DM, Wang Y. Yu G, et al. Among authors: wu ct. Sci Rep. 2019 Feb 21;9(1):2455. doi: 10.1038/s41598-019-38983-z. Sci Rep. 2019. PMID: 30792419 Free PMC article.

3

SynQuant: an automatic tool to quantify synapses from microscopy images.

Wang Y, Wang C, Ranefall P, Broussard GJ, Wang Y, Shi G, Lyu B, Wu CT, Wang Y, Tian L, Yu G. Wang Y, et al. Among authors: wu ct. Bioinformatics. 2020 Mar 1;36(5):1599-1606. doi: 10.1093/bioinformatics/btz760. Bioinformatics. 2020. PMID: 31596456 Free PMC article.

4

Targeted realignment of LC-MS profiles by neighbor-wise compound-specific graphical time warping with misalignment detection.

Wu CT, Wang Y, Wang Y, Ebbels T, Karaman I, Graça G, Pinto R, Herrington DM, Wang Y, Yu G. Wu CT, et al. Bioinformatics. 2020 May 1;36(9):2862-2871. doi: 10.1093/bioinformatics/btaa037. Bioinformatics. 2020. PMID: 31950989 Free PMC article.

5

debCAM: a bioconductor R package for fully unsupervised deconvolution of complex tissues.

Chen L, Wu CT, Wang N, Herrington DM, Clarke R, Wang Y. Chen L, et al. Among authors: wu ct. Bioinformatics. 2020 Jun 1;36(12):3927-3929. doi: 10.1093/bioinformatics/btaa205. Bioinformatics. 2020. PMID: 32219387 Free PMC article.

6

Data-driven detection of subtype-specific differentially expressed genes.

Chen L, Lu Y, Wu CT, Clarke R, Yu G, Van Eyk JE, Herrington DM, Wang Y. Chen L, et al. Among authors: wu ct. Sci Rep. 2021 Jan 11;11(1):332. doi: 10.1038/s41598-020-79704-1. Sci Rep. 2021. PMID: 33432005 Free PMC article.

7

swCAM: estimation of subtype-specific expressions in individual samples with unsupervised sample-wise deconvolution.

Chen L, Wu CT, Lin CH, Dai R, Liu C, Clarke R, Yu G, Van Eyk JE, Herrington DM, Wang Y. Chen L, et al. Among authors: wu ct. Bioinformatics. 2022 Feb 7;38(5):1403-1410. doi: 10.1093/bioinformatics/btab839. Bioinformatics. 2022. PMID: 34904628 Free PMC article.

8

COT: an efficient and accurate method for detecting marker genes among many subtypes.

Lu Y, Wu CT, Parker SJ, Cheng Z, Saylor G, Van Eyk JE, Yu G, Clarke R, Herrington DM, Wang Y. Lu Y, et al. Among authors: wu ct. Bioinform Adv. 2022 May 27;2(1):vbac037. doi: 10.1093/bioadv/vbac037. eCollection 2022. Bioinform Adv. 2022. PMID: 35673616 Free PMC article.

9

Cosbin: cosine score-based iterative normalization of biologically diverse samples.

Wu CT, Shen M, Du D, Cheng Z, Parker SJ, Lu Y, Van Eyk JE, Yu G, Clarke R, Herrington DM, Wang Y. Wu CT, et al. Bioinform Adv. 2022 Oct 20;2(1):vbac076. doi: 10.1093/bioadv/vbac076. eCollection 2022. Bioinform Adv. 2022. PMID: 36330358 Free PMC article.

10

CAM3.0: determining cell type composition and expression from bulk tissues with fully unsupervised deconvolution.

Wu CT, Du D, Chen L, Dai R, Liu C, Yu G, Bhardwaj S, Parker SJ, Zhang Z, Clarke R, Herrington DM, Wang Y. Wu CT, et al. Bioinformatics. 2024 Mar 4;40(3):btae107. doi: 10.1093/bioinformatics/btae107. Bioinformatics. 2024. PMID: 38407991 Free PMC article.

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