Reumers J - Search Results

1

Comparative analysis of antibody- and lipid-based multiplexing methods for single-cell RNA-seq.

Mylka V, Matetovici I, Poovathingal S, Aerts J, Vandamme N, Seurinck R, Verstaen K, Hulselmans G, Van den Hoecke S, Scheyltjens I, Movahedi K, Wils H, Reumers J, Van Houdt J, Aerts S, Saeys Y. Mylka V, et al. Among authors: reumers j. Genome Biol. 2022 Feb 16;23(1):55. doi: 10.1186/s13059-022-02628-8. Genome Biol. 2022. PMID: 35172874 Free PMC article.

2

Identification of cis-regulatory mutations generating de novo edges in personalized cancer gene regulatory networks.

Kalender Atak Z, Imrichova H, Svetlichnyy D, Hulselmans G, Christiaens V, Reumers J, Ceulemans H, Aerts S. Kalender Atak Z, et al. Among authors: reumers j. Genome Med. 2017 Aug 30;9(1):80. doi: 10.1186/s13073-017-0464-7. Genome Med. 2017. PMID: 28854983 Free PMC article.

3

A scalable SCENIC workflow for single-cell gene regulatory network analysis.

Van de Sande B, Flerin C, Davie K, De Waegeneer M, Hulselmans G, Aibar S, Seurinck R, Saelens W, Cannoodt R, Rouchon Q, Verbeiren T, De Maeyer D, Reumers J, Saeys Y, Aerts S. Van de Sande B, et al. Among authors: reumers j. Nat Protoc. 2020 Jul;15(7):2247-2276. doi: 10.1038/s41596-020-0336-2. Epub 2020 Jun 19. Nat Protoc. 2020. PMID: 32561888

4

Mismatch repair deficiency endows tumors with a unique mutation signature and sensitivity to DNA double-strand breaks.

Zhao H, Thienpont B, Yesilyurt BT, Moisse M, Reumers J, Coenegrachts L, Sagaert X, Schrauwen S, Smeets D, Matthijs G, Aerts S, Cools J, Metcalf A, Spurdle A; ANECS; Amant F, Lambrechts D. Zhao H, et al. Among authors: reumers j. Elife. 2014 Aug 1;3:e02725. doi: 10.7554/eLife.02725. Elife. 2014. PMID: 25085081 Free PMC article.

5

Efficiency of whole genome amplification of single circulating tumor cells enriched by CellSearch and sorted by FACS.

Swennenhuis JF, Reumers J, Thys K, Aerssens J, Terstappen LW. Swennenhuis JF, et al. Among authors: reumers j. Genome Med. 2013 Nov 29;5(11):106. doi: 10.1186/gm510. eCollection 2013. Genome Med. 2013. PMID: 24286536 Free PMC article.

6

Halvade-RNA: Parallel variant calling from transcriptomic data using MapReduce.

Decap D, Reumers J, Herzeel C, Costanza P, Fostier J. Decap D, et al. Among authors: reumers j. PLoS One. 2017 Mar 30;12(3):e0174575. doi: 10.1371/journal.pone.0174575. eCollection 2017. PLoS One. 2017. PMID: 28358893 Free PMC article.

7

Halvade: scalable sequence analysis with MapReduce.

Decap D, Reumers J, Herzeel C, Costanza P, Fostier J. Decap D, et al. Among authors: reumers j. Bioinformatics. 2015 Aug 1;31(15):2482-8. doi: 10.1093/bioinformatics/btv179. Epub 2015 Mar 26. Bioinformatics. 2015. PMID: 25819078 Free PMC article.

8

QQ-SNV: single nucleotide variant detection at low frequency by comparing the quality quantiles.

Van der Borght K, Thys K, Wetzels Y, Clement L, Verbist B, Reumers J, van Vlijmen H, Aerssens J. Van der Borght K, et al. Among authors: reumers j. BMC Bioinformatics. 2015 Nov 10;16:379. doi: 10.1186/s12859-015-0812-9. BMC Bioinformatics. 2015. PMID: 26554718 Free PMC article.

9

SNPeffect 4.0: on-line prediction of molecular and structural effects of protein-coding variants.

De Baets G, Van Durme J, Reumers J, Maurer-Stroh S, Vanhee P, Dopazo J, Schymkowitz J, Rousseau F. De Baets G, et al. Among authors: reumers j. Nucleic Acids Res. 2012 Jan;40(Database issue):D935-9. doi: 10.1093/nar/gkr996. Epub 2011 Nov 10. Nucleic Acids Res. 2012. PMID: 22075996 Free PMC article.

10

Reconstruction of protein backbones from the BriX collection of canonical protein fragments.

Baeten L, Reumers J, Tur V, Stricher F, Lenaerts T, Serrano L, Rousseau F, Schymkowitz J. Baeten L, et al. Among authors: reumers j. PLoS Comput Biol. 2008 May 23;4(5):e1000083. doi: 10.1371/journal.pcbi.1000083. PLoS Comput Biol. 2008. PMID: 18483555 Free PMC article.

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