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Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space.
Schatz MC, Philippakis AA, Afgan E, Banks E, Carey VJ, Carroll RJ, Culotti A, Ellrott K, Goecks J, Grossman RL, Hall IM, Hansen KD, Lawson J, Leek JT, Luria AO, Mosher S, Morgan M, Nekrutenko A, O'Connor BD, Osborn K, Paten B, Patterson C, Tan FJ, Taylor CO, Vessio J, Waldron L, Wang T, Wuichet K. Schatz MC, et al. Among authors: leek jt. Cell Genom. 2022 Jan 12;2(1):100085. doi: 10.1016/j.xgen.2021.100085. Epub 2022 Jan 13. Cell Genom. 2022. PMID: 35199087 Free PMC article.
Reproducible RNA-seq analysis using recount2.
Collado-Torres L, Nellore A, Kammers K, Ellis SE, Taub MA, Hansen KD, Jaffe AE, Langmead B, Leek JT. Collado-Torres L, et al. Among authors: leek jt. Nat Biotechnol. 2017 Apr 11;35(4):319-321. doi: 10.1038/nbt.3838. Nat Biotechnol. 2017. PMID: 28398307 Free PMC article. No abstract available.
recount3: summaries and queries for large-scale RNA-seq expression and splicing.
Wilks C, Zheng SC, Chen FY, Charles R, Solomon B, Ling JP, Imada EL, Zhang D, Joseph L, Leek JT, Jaffe AE, Nellore A, Collado-Torres L, Hansen KD, Langmead B. Wilks C, et al. Among authors: leek jt. Genome Biol. 2021 Nov 29;22(1):323. doi: 10.1186/s13059-021-02533-6. Genome Biol. 2021. PMID: 34844637 Free PMC article.
Diversifying the genomic data science research community.
Genomic Data Science Community Network. Genomic Data Science Community Network. Genome Res. 2022 Jul 27;32(7):1231-1241. doi: 10.1101/gr.276496.121. Genome Res. 2022. PMID: 35858750 Free PMC article. Review.
Open-source Tools for Training Resources - OTTR.
Savonen C, Wright C, Hoffman AM, Muschelli J, Cox K, Tan FJ, Leek JT. Savonen C, et al. Among authors: leek jt. J Stat Data Sci Educ. 2023;31(1):57-65. doi: 10.1080/26939169.2022.2118646. Epub 2022 Oct 31. J Stat Data Sci Educ. 2023. PMID: 37207236 Free PMC article.
86 results