Romualdi C - Search Results

1

NewWave: a scalable R/Bioconductor package for the dimensionality reduction and batch effect removal of single-cell RNA-seq data.

Agostinis F, Romualdi C, Sales G, Risso D. Agostinis F, et al. Among authors: romualdi c. Bioinformatics. 2022 Apr 28;38(9):2648-2650. doi: 10.1093/bioinformatics/btac149. Bioinformatics. 2022. PMID: 35266509 Free PMC article.

2

RAP: a new computer program for de novo identification of repeated sequences in whole genomes.

Campagna D, Romualdi C, Vitulo N, Del Favero M, Lexa M, Cannata N, Valle G. Campagna D, et al. Among authors: romualdi c. Bioinformatics. 2005 Mar 1;21(5):582-8. doi: 10.1093/bioinformatics/bti039. Epub 2004 Sep 16. Bioinformatics. 2005. PMID: 15374857

3

A comparison on effects of normalisations in the detection of differentially expressed genes.

Chiogna M, Massa MS, Risso D, Romualdi C. Chiogna M, et al. Among authors: romualdi c. BMC Bioinformatics. 2009 Feb 13;10:61. doi: 10.1186/1471-2105-10-61. BMC Bioinformatics. 2009. PMID: 19216778 Free PMC article.

4

A-MADMAN: annotation-based microarray data meta-analysis tool.

Bisognin A, Coppe A, Ferrari F, Risso D, Romualdi C, Bicciato S, Bortoluzzi S. Bisognin A, et al. Among authors: romualdi c. BMC Bioinformatics. 2009 Jun 29;10:201. doi: 10.1186/1471-2105-10-201. BMC Bioinformatics. 2009. PMID: 19563634 Free PMC article.

5

A modified LOESS normalization applied to microRNA arrays: a comparative evaluation.

Risso D, Massa MS, Chiogna M, Romualdi C. Risso D, et al. Among authors: romualdi c. Bioinformatics. 2009 Oct 15;25(20):2685-91. doi: 10.1093/bioinformatics/btp443. Epub 2009 Jul 23. Bioinformatics. 2009. PMID: 19628505

6

Impact of probe annotation on the integration of miRNA-mRNA expression profiles for miRNA target detection.

Sales G, Coppe A, Bicciato S, Bortoluzzi S, Romualdi C. Sales G, et al. Among authors: romualdi c. Nucleic Acids Res. 2010 Apr;38(7):e97. doi: 10.1093/nar/gkp1239. Epub 2010 Jan 13. Nucleic Acids Res. 2010. PMID: 20071740 Free PMC article.

7

MAGIA, a web-based tool for miRNA and Genes Integrated Analysis.

Sales G, Coppe A, Bisognin A, Biasiolo M, Bortoluzzi S, Romualdi C. Sales G, et al. Among authors: romualdi c. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W352-9. doi: 10.1093/nar/gkq423. Epub 2010 May 19. Nucleic Acids Res. 2010. PMID: 20484379 Free PMC article.

8

Statistical Test of Expression Pattern (STEPath): a new strategy to integrate gene expression data with genomic information in individual and meta-analysis studies.

Martini P, Risso D, Sales G, Romualdi C, Lanfranchi G, Cagnin S. Martini P, et al. Among authors: romualdi c. BMC Bioinformatics. 2011 Apr 11;12:92. doi: 10.1186/1471-2105-12-92. BMC Bioinformatics. 2011. PMID: 21481242 Free PMC article.

9

parmigene--a parallel R package for mutual information estimation and gene network reconstruction.

Sales G, Romualdi C. Sales G, et al. Among authors: romualdi c. Bioinformatics. 2011 Jul 1;27(13):1876-7. doi: 10.1093/bioinformatics/btr274. Epub 2011 Apr 29. Bioinformatics. 2011. PMID: 21531770

10

Impact of host genes and strand selection on miRNA and miRNA* expression.

Biasiolo M, Sales G, Lionetti M, Agnelli L, Todoerti K, Bisognin A, Coppe A, Romualdi C, Neri A, Bortoluzzi S. Biasiolo M, et al. Among authors: romualdi c. PLoS One. 2011;6(8):e23854. doi: 10.1371/journal.pone.0023854. Epub 2011 Aug 31. PLoS One. 2011. PMID: 21909367 Free PMC article.

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