Dameron O - Search Results

1

Improving reusability along the data life cycle: a regulatory circuits case study.

Louarn M, Chatonnet F, Garnier X, Fest T, Siegel A, Faron C, Dameron O. Louarn M, et al. Among authors: dameron o. J Biomed Semantics. 2022 Mar 28;13(1):11. doi: 10.1186/s13326-022-00266-4. J Biomed Semantics. 2022. PMID: 35346379 Free PMC article.

2

GO2PUB: Querying PubMed with semantic expansion of gene ontology terms.

Bettembourg C, Diot C, Burgun A, Dameron O. Bettembourg C, et al. Among authors: dameron o. J Biomed Semantics. 2012 Sep 7;3(1):7. doi: 10.1186/2041-1480-3-7. J Biomed Semantics. 2012. PMID: 22958570 Free PMC article.

3

The genome-scale metabolic network of Ectocarpus siliculosus (EctoGEM): a resource to study brown algal physiology and beyond.

Prigent S, Collet G, Dittami SM, Delage L, Ethis de Corny F, Dameron O, Eveillard D, Thiele S, Cambefort J, Boyen C, Siegel A, Tonon T. Prigent S, et al. Among authors: dameron o. Plant J. 2014 Oct;80(2):367-81. doi: 10.1111/tpj.12627. Epub 2014 Aug 27. Plant J. 2014. PMID: 25065645 Free article.

4

Traceability, reproducibility and wiki-exploration for "à-la-carte" reconstructions of genome-scale metabolic models.

Aite M, Chevallier M, Frioux C, Trottier C, Got J, Cortés MP, Mendoza SN, Carrier G, Dameron O, Guillaudeux N, Latorre M, Loira N, Markov GV, Maass A, Siegel A. Aite M, et al. Among authors: dameron o. PLoS Comput Biol. 2018 May 23;14(5):e1006146. doi: 10.1371/journal.pcbi.1006146. eCollection 2018 May. PLoS Comput Biol. 2018. PMID: 29791443 Free PMC article.

5

Formalizing and enriching phenotype signatures using Boolean networks.

Wery M, Dameron O, Nicolas J, Remy E, Siegel A. Wery M, et al. Among authors: dameron o. J Theor Biol. 2019 Apr 21;467:66-79. doi: 10.1016/j.jtbi.2019.01.015. Epub 2019 Feb 6. J Theor Biol. 2019. PMID: 30738049

6

Regulus infers signed regulatory relations from few samples' information using discretization and likelihood constraints.

Louarn M, Collet G, Barré È, Fest T, Dameron O, Siegel A, Chatonnet F. Louarn M, et al. Among authors: dameron o. PLoS Comput Biol. 2024 Jan 22;20(1):e1011816. doi: 10.1371/journal.pcbi.1011816. eCollection 2024 Jan. PLoS Comput Biol. 2024. PMID: 38252636 Free PMC article.

7

OWL model of clinical trial eligibility criteria compatible with partially-known information.

Dameron O, Besana P, Zekri O, Bourdé A, Burgun A, Cuggia M. Dameron O, et al. J Biomed Semantics. 2013 Sep 13;4(1):17. doi: 10.1186/2041-1480-4-17. J Biomed Semantics. 2013. PMID: 24034867 Free PMC article.

8

queryMed: Semantic Web functions for linking pharmacological and medical knowledge to data.

Rivault Y, Dameron O, Le Meur N. Rivault Y, et al. Among authors: dameron o. Bioinformatics. 2019 Sep 1;35(17):3203-3205. doi: 10.1093/bioinformatics/btz034. Bioinformatics. 2019. PMID: 30657867 Free article.

9

A unified structural/terminological interoperability framework based on LexEVS: application to TRANSFoRm.

Ethier JF, Dameron O, Curcin V, McGilchrist MM, Verheij RA, Arvanitis TN, Taweel A, Delaney BC, Burgun A. Ethier JF, et al. Among authors: dameron o. J Am Med Inform Assoc. 2013 Sep-Oct;20(5):986-94. doi: 10.1136/amiajnl-2012-001312. Epub 2013 Apr 9. J Am Med Inform Assoc. 2013. PMID: 23571850 Free PMC article.

10

Towards a reproducible interactome: semantic-based detection of redundancies to unify protein-protein interaction databases.

Melkonian M, Juigné C, Dameron O, Rabut G, Becker E. Melkonian M, et al. Among authors: dameron o. Bioinformatics. 2022 Mar 4;38(6):1685-1691. doi: 10.1093/bioinformatics/btac013. Bioinformatics. 2022. PMID: 35015827 Free article. Review.

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