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Page 1
Epigenetic patterns in a complete human genome.
Gershman A, Sauria MEG, Guitart X, Vollger MR, Hook PW, Hoyt SJ, Jain M, Shumate A, Razaghi R, Koren S, Altemose N, Caldas GV, Logsdon GA, Rhie A, Eichler EE, Schatz MC, O'Neill RJ, Phillippy AM, Miga KH, Timp W. Gershman A, et al. Among authors: timp w. Science. 2022 Apr;376(6588):eabj5089. doi: 10.1126/science.abj5089. Epub 2022 Apr 1. Science. 2022. PMID: 35357915 Free PMC article.
A Genome Sequence for the Threatened Whitebark Pine.
Neale DB, Zimin AV, Meltzer A, Bhattarai A, Amee M, Corona LF, Allen BJ, Puiu D, Wright J, Torre AR, McGuire PE, Timp W, Salzberg SL, Wegrzyn JL. Neale DB, et al. Among authors: timp w. bioRxiv [Preprint]. 2023 Nov 17:2023.11.16.567420. doi: 10.1101/2023.11.16.567420. bioRxiv. 2023. Update in: G3 (Bethesda). 2024 May 7;14(5):jkae061. doi: 10.1093/g3journal/jkae061 PMID: 38014212 Free PMC article. Updated. Preprint.
Increased methylation variation in epigenetic domains across cancer types.
Hansen KD, Timp W, Bravo HC, Sabunciyan S, Langmead B, McDonald OG, Wen B, Wu H, Liu Y, Diep D, Briem E, Zhang K, Irizarry RA, Feinberg AP. Hansen KD, et al. Among authors: timp w. Nat Genet. 2011 Jun 26;43(8):768-75. doi: 10.1038/ng.865. Nat Genet. 2011. PMID: 21706001 Free PMC article.
Applying Rapid Whole-Genome Sequencing To Predict Phenotypic Antimicrobial Susceptibility Testing Results among Carbapenem-Resistant Klebsiella pneumoniae Clinical Isolates.
Tamma PD, Fan Y, Bergman Y, Pertea G, Kazmi AQ, Lewis S, Carroll KC, Schatz MC, Timp W, Simner PJ. Tamma PD, et al. Among authors: timp w. Antimicrob Agents Chemother. 2018 Dec 21;63(1):e01923-18. doi: 10.1128/AAC.01923-18. Print 2019 Jan. Antimicrob Agents Chemother. 2018. PMID: 30373801 Free PMC article.
Nanopore native RNA sequencing of a human poly(A) transcriptome.
Workman RE, Tang AD, Tang PS, Jain M, Tyson JR, Razaghi R, Zuzarte PC, Gilpatrick T, Payne A, Quick J, Sadowski N, Holmes N, de Jesus JG, Jones KL, Soulette CM, Snutch TP, Loman N, Paten B, Loose M, Simpson JT, Olsen HE, Brooks AN, Akeson M, Timp W. Workman RE, et al. Among authors: timp w. Nat Methods. 2019 Dec;16(12):1297-1305. doi: 10.1038/s41592-019-0617-2. Epub 2019 Nov 18. Nat Methods. 2019. PMID: 31740818 Free PMC article.
Author Correction: Nanopore native RNA sequencing of a human poly(A) transcriptome.
Workman RE, Tang AD, Tang PS, Jain M, Tyson JR, Razaghi R, Zuzarte PC, Gilpatrick T, Payne A, Quick J, Sadowski N, Holmes N, de Jesus JG, Jones KL, Soulette CM, Snutch TP, Loman N, Paten B, Loose M, Simpson JT, Olsen HE, Brooks AN, Akeson M, Timp W. Workman RE, et al. Among authors: timp w. Nat Methods. 2020 Jan;17(1):114. doi: 10.1038/s41592-019-0697-z. Nat Methods. 2020. PMID: 31819268 Free PMC article.
Telomere-to-telomere assembly of a complete human X chromosome.
Miga KH, Koren S, Rhie A, Vollger MR, Gershman A, Bzikadze A, Brooks S, Howe E, Porubsky D, Logsdon GA, Schneider VA, Potapova T, Wood J, Chow W, Armstrong J, Fredrickson J, Pak E, Tigyi K, Kremitzki M, Markovic C, Maduro V, Dutra A, Bouffard GG, Chang AM, Hansen NF, Wilfert AB, Thibaud-Nissen F, Schmitt AD, Belton JM, Selvaraj S, Dennis MY, Soto DC, Sahasrabudhe R, Kaya G, Quick J, Loman NJ, Holmes N, Loose M, Surti U, Risques RA, Graves Lindsay TA, Fulton R, Hall I, Paten B, Howe K, Timp W, Young A, Mullikin JC, Pevzner PA, Gerton JL, Sullivan BA, Eichler EE, Phillippy AM. Miga KH, et al. Among authors: timp w. Nature. 2020 Sep;585(7823):79-84. doi: 10.1038/s41586-020-2547-7. Epub 2020 Jul 14. Nature. 2020. PMID: 32663838 Free PMC article.
104 results