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The pan-cancer landscape of prognostic germline variants in 10,582 patients.
Chatrath A, Przanowska R, Kiran S, Su Z, Saha S, Wilson B, Tsunematsu T, Ahn JH, Lee KY, Paulsen T, Sobierajska E, Kiran M, Tang X, Li T, Kumar P, Ratan A, Dutta A. Chatrath A, et al. Among authors: ratan a. Genome Med. 2020 Feb 17;12(1):15. doi: 10.1186/s13073-020-0718-7. Genome Med. 2020. PMID: 32066500 Free PMC article.
Germline Variants That Affect Tumor Progression.
Chatrath A, Ratan A, Dutta A. Chatrath A, et al. Among authors: ratan a. Trends Genet. 2021 May;37(5):433-443. doi: 10.1016/j.tig.2020.10.005. Epub 2020 Nov 14. Trends Genet. 2021. PMID: 33203571 Free PMC article. Review.
Detecting molecular subtypes from multi-omics datasets using SUMO.
Sienkiewicz K, Chen J, Chatrath A, Lawson JT, Sheffield NC, Zhang L, Ratan A. Sienkiewicz K, et al. Among authors: ratan a. Cell Rep Methods. 2022 Jan 24;2(1):100152. doi: 10.1016/j.crmeth.2021.100152. Epub 2022 Jan 14. Cell Rep Methods. 2022. PMID: 35211690 Free PMC article.
Improved molecular karyotyping in glioblastoma.
Burbulis IE, Wierman MB, Wolpert M, Haakenson M, Lopes MB, Schiff D, Hicks J, Loe J, Ratan A, McConnell MJ. Burbulis IE, et al. Among authors: ratan a. Mutat Res. 2018 Sep;811:16-26. doi: 10.1016/j.mrfmmm.2018.06.002. Epub 2018 Jul 8. Mutat Res. 2018. PMID: 30055482
Dynamic incorporation of multiple in silico functional annotations empowers rare variant association analysis of large whole-genome sequencing studies at scale.
Li X, Li Z, Zhou H, Gaynor SM, Liu Y, Chen H, Sun R, Dey R, Arnett DK, Aslibekyan S, Ballantyne CM, Bielak LF, Blangero J, Boerwinkle E, Bowden DW, Broome JG, Conomos MP, Correa A, Cupples LA, Curran JE, Freedman BI, Guo X, Hindy G, Irvin MR, Kardia SLR, Kathiresan S, Khan AT, Kooperberg CL, Laurie CC, Liu XS, Mahaney MC, Manichaikul AW, Martin LW, Mathias RA, McGarvey ST, Mitchell BD, Montasser ME, Moore JE, Morrison AC, O'Connell JR, Palmer ND, Pampana A, Peralta JM, Peyser PA, Psaty BM, Redline S, Rice KM, Rich SS, Smith JA, Tiwari HK, Tsai MY, Vasan RS, Wang FF, Weeks DE, Weng Z, Wilson JG, Yanek LR; NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium; TOPMed Lipids Working Group; Neale BM, Sunyaev SR, Abecasis GR, Rotter JI, Willer CJ, Peloso GM, Natarajan P, Lin X. Li X, et al. Nat Genet. 2020 Sep;52(9):969-983. doi: 10.1038/s41588-020-0676-4. Epub 2020 Aug 24. Nat Genet. 2020. PMID: 32839606 Free PMC article.
124 results