Fahrner M - Search Results

1

MaxQuant and MSstats in Galaxy Enable Reproducible Cloud-Based Analysis of Quantitative Proteomics Experiments for Everyone.

Pinter N, Glätzer D, Fahrner M, Fröhlich K, Johnson J, Grüning BA, Warscheid B, Drepper F, Schilling O, Föll MC. Pinter N, et al. Among authors: fahrner m. J Proteome Res. 2022 Jun 3;21(6):1558-1565. doi: 10.1021/acs.jproteome.2c00051. Epub 2022 May 3. J Proteome Res. 2022. PMID: 35503992

2

Identification of tissue damage, extracellular matrix remodeling and bacterial challenge as common mechanisms associated with high-risk cutaneous squamous cell carcinomas.

Föll MC, Fahrner M, Gretzmeier C, Thoma K, Biniossek ML, Kiritsi D, Meiss F, Schilling O, Nyström A, Kern JS. Föll MC, et al. Among authors: fahrner m. Matrix Biol. 2018 Mar;66:1-21. doi: 10.1016/j.matbio.2017.11.004. Epub 2017 Nov 20. Matrix Biol. 2018. PMID: 29158163

3

Reproducible proteomics sample preparation for single FFPE tissue slices using acid-labile surfactant and direct trypsinization.

Föll MC, Fahrner M, Oria VO, Kühs M, Biniossek ML, Werner M, Bronsert P, Schilling O. Föll MC, et al. Among authors: fahrner m. Clin Proteomics. 2018 Mar 6;15:11. doi: 10.1186/s12014-018-9188-y. eCollection 2018. Clin Proteomics. 2018. PMID: 29527141 Free PMC article.

4

Depletion of histone methyltransferase KMT9 inhibits lung cancer cell proliferation by inducing non-apoptotic cell death.

Baumert HM, Metzger E, Fahrner M, George J, Thomas RK, Schilling O, Schüle R. Baumert HM, et al. Among authors: fahrner m. Cancer Cell Int. 2020 Feb 17;20:52. doi: 10.1186/s12935-020-1141-2. eCollection 2020. Cancer Cell Int. 2020. PMID: 32095117 Free PMC article.

5

Discovery of a small protein factor involved in the coordinated degradation of phycobilisomes in cyanobacteria.

Krauspe V, Fahrner M, Spät P, Steglich C, Frankenberg-Dinkel N, Maček B, Schilling O, Hess WR. Krauspe V, et al. Among authors: fahrner m. Proc Natl Acad Sci U S A. 2021 Feb 2;118(5):e2012277118. doi: 10.1073/pnas.2012277118. Proc Natl Acad Sci U S A. 2021. PMID: 33509926 Free PMC article.

6

Fostering accessible online education using Galaxy as an e-learning platform.

Serrano-Solano B, Föll MC, Gallardo-Alba C, Erxleben A, Rasche H, Hiltemann S, Fahrner M, Dunning MJ, Schulz MH, Scholtz B, Clements D, Nekrutenko A, Batut B, Grüning BA. Serrano-Solano B, et al. Among authors: fahrner m. PLoS Comput Biol. 2021 May 13;17(5):e1008923. doi: 10.1371/journal.pcbi.1008923. eCollection 2021 May. PLoS Comput Biol. 2021. PMID: 33983944 Free PMC article.

7

A Systematic Evaluation of Semispecific Peptide Search Parameter Enables Identification of Previously Undescribed N-Terminal Peptides and Conserved Proteolytic Processing in Cancer Cell Lines.

Fahrner M, Kook L, Fröhlich K, Biniossek ML, Schilling O. Fahrner M, et al. Proteomes. 2021 May 25;9(2):26. doi: 10.3390/proteomes9020026. Proteomes. 2021. PMID: 34070654 Free PMC article.

8

Netherton syndrome subtypes share IL-17/IL-36 signature with distinct IFN-α and allergic responses.

Barbieux C, Bonnet des Claustres M, Fahrner M, Petrova E, Tsoi LC, Gouin O, Leturcq F, Nicaise-Roland P, Bole C, Béziat V, Bourrat E, Schilling O, Gudjonsson JE, Hovnanian A. Barbieux C, et al. Among authors: fahrner m. J Allergy Clin Immunol. 2022 Apr;149(4):1358-1372. doi: 10.1016/j.jaci.2021.08.024. Epub 2021 Sep 17. J Allergy Clin Immunol. 2022. PMID: 34543653 Free article.

9

Proteome biology of primary colorectal carcinoma and corresponding liver metastases.

Fahrner M, Bronsert P, Fichtner-Feigl S, Jud A, Schilling O. Fahrner M, et al. Neoplasia. 2021 Dec;23(12):1240-1251. doi: 10.1016/j.neo.2021.10.005. Epub 2021 Nov 9. Neoplasia. 2021. PMID: 34768110 Free PMC article.

10

Democratizing data-independent acquisition proteomics analysis on public cloud infrastructures via the Galaxy framework.

Fahrner M, Föll MC, Grüning BA, Bernt M, Röst H, Schilling O. Fahrner M, et al. Gigascience. 2022 Feb 15;11:giac005. doi: 10.1093/gigascience/giac005. Gigascience. 2022. PMID: 35166338 Free PMC article.

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