Carbonetto P - Search Results

1

Fine-mapping studies distinguish genetic risks for childhood- and adult-onset asthma in the HLA region.

Clay SM, Schoettler N, Goldstein AM, Carbonetto P, Dapas M, Altman MC, Rosasco MG, Gern JE, Jackson DJ, Im HK, Stephens M, Nicolae DL, Ober C. Clay SM, et al. Among authors: carbonetto p. Genome Med. 2022 May 24;14(1):55. doi: 10.1186/s13073-022-01058-2. Genome Med. 2022. PMID: 35606880 Free PMC article.

2

Polygenic modeling with bayesian sparse linear mixed models.

Zhou X, Carbonetto P, Stephens M. Zhou X, et al. Among authors: carbonetto p. PLoS Genet. 2013;9(2):e1003264. doi: 10.1371/journal.pgen.1003264. Epub 2013 Feb 7. PLoS Genet. 2013. PMID: 23408905 Free PMC article.

3

Integrated enrichment analysis of variants and pathways in genome-wide association studies indicates central role for IL-2 signaling genes in type 1 diabetes, and cytokine signaling genes in Crohn's disease.

Carbonetto P, Stephens M. Carbonetto P, et al. PLoS Genet. 2013;9(10):e1003770. doi: 10.1371/journal.pgen.1003770. Epub 2013 Oct 3. PLoS Genet. 2013. PMID: 24098138 Free PMC article.

4

Accurate genomic prediction of Coffea canephora in multiple environments using whole-genome statistical models.

Ferrão LFV, Ferrão RG, Ferrão MAG, Fonseca A, Carbonetto P, Stephens M, Garcia AAF. Ferrão LFV, et al. Among authors: carbonetto p. Heredity (Edinb). 2019 Mar;122(3):261-275. doi: 10.1038/s41437-018-0105-y. Epub 2018 Jun 25. Heredity (Edinb). 2019. PMID: 29941997 Free PMC article.

5

Flexible statistical methods for estimating and testing effects in genomic studies with multiple conditions.

Urbut SM, Wang G, Carbonetto P, Stephens M. Urbut SM, et al. Among authors: carbonetto p. Nat Genet. 2019 Jan;51(1):187-195. doi: 10.1038/s41588-018-0268-8. Epub 2018 Nov 26. Nat Genet. 2019. PMID: 30478440 Free PMC article.

6

Creating and sharing reproducible research code the workflowr way.

Blischak JD, Carbonetto P, Stephens M. Blischak JD, et al. Among authors: carbonetto p. F1000Res. 2019 Oct 14;8:1749. doi: 10.12688/f1000research.20843.1. eCollection 2019. F1000Res. 2019. PMID: 31723427 Free PMC article.

7

A Fast Algorithm for Maximum Likelihood Estimation of Mixture Proportions Using Sequential Quadratic Programming.

Kim Y, Carbonetto P, Stephens M, Anitescu M. Kim Y, et al. Among authors: carbonetto p. J Comput Graph Stat. 2020;29(2):261-273. doi: 10.1080/10618600.2019.1689985. Epub 2020 Jan 8. J Comput Graph Stat. 2020. PMID: 33762803 Free PMC article.

8

Fine-mapping from summary data with the "Sum of Single Effects" model.

Zou Y, Carbonetto P, Wang G, Stephens M. Zou Y, et al. Among authors: carbonetto p. PLoS Genet. 2022 Jul 19;18(7):e1010299. doi: 10.1371/journal.pgen.1010299. eCollection 2022 Jul. PLoS Genet. 2022. PMID: 35853082 Free PMC article.

9

A simple new approach to variable selection in regression, with application to genetic fine mapping.

Wang G, Sarkar A, Carbonetto P, Stephens M. Wang G, et al. Among authors: carbonetto p. J R Stat Soc Series B Stat Methodol. 2020 Dec;82(5):1273-1300. doi: 10.1111/rssb.12388. Epub 2020 Jul 10. J R Stat Soc Series B Stat Methodol. 2020. PMID: 37220626 Free PMC article.

10

A flexible empirical Bayes approach to multivariate multiple regression, and its improved accuracy in predicting multi-tissue gene expression from genotypes.

Morgante F, Carbonetto P, Wang G, Zou Y, Sarkar A, Stephens M. Morgante F, et al. Among authors: carbonetto p. PLoS Genet. 2023 Jul 7;19(7):e1010539. doi: 10.1371/journal.pgen.1010539. eCollection 2023 Jul. PLoS Genet. 2023. PMID: 37418505 Free PMC article.

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