Fremin BJ - Search Results

1

Thousands of small, novel genes predicted in global phage genomes.

Fremin BJ, Bhatt AS, Kyrpides NC; Global Phage Small Open Reading Frame (GP-SmORF) Consortium. Fremin BJ, et al. Cell Rep. 2022 Jun 21;39(12):110984. doi: 10.1016/j.celrep.2022.110984. Cell Rep. 2022. PMID: 35732113 Free PMC article.

2

Allied Commensal Forces against Vancomycin-Resistant Enterococci.

Fremin BJ, Bhatt AS. Fremin BJ, et al. Cell Host Microbe. 2017 May 10;21(5):559-560. doi: 10.1016/j.chom.2017.04.015. Cell Host Microbe. 2017. PMID: 28494236 Free PMC article.

3

Transient Osmotic Perturbation Causes Long-Term Alteration to the Gut Microbiota.

Tropini C, Moss EL, Merrill BD, Ng KM, Higginbottom SK, Casavant EP, Gonzalez CG, Fremin B, Bouley DM, Elias JE, Bhatt AS, Huang KC, Sonnenburg JL. Tropini C, et al. Cell. 2018 Jun 14;173(7):1742-1754.e17. doi: 10.1016/j.cell.2018.05.008. Cell. 2018. PMID: 29906449 Free PMC article.

4

Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes.

Sberro H, Fremin BJ, Zlitni S, Edfors F, Greenfield N, Snyder MP, Pavlopoulos GA, Kyrpides NC, Bhatt AS. Sberro H, et al. Among authors: fremin bj. Cell. 2019 Aug 22;178(5):1245-1259.e14. doi: 10.1016/j.cell.2019.07.016. Epub 2019 Aug 8. Cell. 2019. PMID: 31402174 Free PMC article.

5

MetaRibo-Seq measures translation in microbiomes.

Fremin BJ, Sberro H, Bhatt AS. Fremin BJ, et al. Nat Commun. 2020 Jun 29;11(1):3268. doi: 10.1038/s41467-020-17081-z. Nat Commun. 2020. PMID: 32601270 Free PMC article.

6

Structured RNA Contaminants in Bacterial Ribo-Seq.

Fremin BJ, Bhatt AS. Fremin BJ, et al. mSphere. 2020 Oct 21;5(5):e00855-20. doi: 10.1128/mSphere.00855-20. mSphere. 2020. PMID: 33087519 Free PMC article.

7

Comparative genomics identifies thousands of candidate structured RNAs in human microbiomes.

Fremin BJ, Bhatt AS. Fremin BJ, et al. Genome Biol. 2021 Apr 12;22(1):100. doi: 10.1186/s13059-021-02319-w. Genome Biol. 2021. PMID: 33845850 Free PMC article.

8

Simultaneous ribosome profiling of hundreds of microbes from the human microbiome.

Fremin BJ, Nicolaou C, Bhatt AS. Fremin BJ, et al. Nat Protoc. 2021 Oct;16(10):4676-4691. doi: 10.1038/s41596-021-00592-4. Epub 2021 Aug 11. Nat Protoc. 2021. PMID: 34381207 Free PMC article. Review.

9

Identifying candidate structured RNAs in CRISPR operons.

Fremin BJ, Kyrpides NC. Fremin BJ, et al. RNA Biol. 2022;19(1):678-685. doi: 10.1080/15476286.2022.2067714. Epub 2021 Dec 31. RNA Biol. 2022. PMID: 35491944 Free PMC article.

10

Identification of over ten thousand candidate structured RNAs in viruses and phages.

Fremin BJ, Bhatt AS, Kyrpides NC. Fremin BJ, et al. Comput Struct Biotechnol J. 2023 Nov 7;21:5630-5639. doi: 10.1016/j.csbj.2023.11.010. eCollection 2023. Comput Struct Biotechnol J. 2023. PMID: 38047235 Free PMC article.

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