Ma A - Search Results

1

DESSO-DB: A web database for sequence and shape motif analyses and identification.

Wang X, Wang C, Li L, Ma Q, Ma A, Liu B. Wang X, et al. Among authors: ma q, ma a. Comput Struct Biotechnol J. 2022 Jun 16;20:3053-3058. doi: 10.1016/j.csbj.2022.06.031. eCollection 2022. Comput Struct Biotechnol J. 2022. PMID: 35782725 Free PMC article.

2

It is time to apply biclustering: a comprehensive review of biclustering applications in biological and biomedical data.

Xie J, Ma A, Fennell A, Ma Q, Zhao J. Xie J, et al. Among authors: ma a, ma q. Brief Bioinform. 2019 Jul 19;20(4):1449-1464. doi: 10.1093/bib/bby014. Brief Bioinform. 2019. PMID: 29490019 Free PMC article. Review.

3

RECTA: Regulon Identification Based on Comparative Genomics and Transcriptomics Analysis.

Chen X, Ma A, McDermaid A, Zhang H, Liu C, Cao H, Ma Q. Chen X, et al. Among authors: ma a, ma q. Genes (Basel). 2018 May 30;9(6):278. doi: 10.3390/genes9060278. Genes (Basel). 2018. PMID: 29849014 Free PMC article.

4

A Review of Matched-pairs Feature Selection Methods for Gene Expression Data Analysis.

Liang S, Ma A, Yang S, Wang Y, Ma Q. Liang S, et al. Among authors: ma a, ma q. Comput Struct Biotechnol J. 2018 Feb 25;16:88-97. doi: 10.1016/j.csbj.2018.02.005. eCollection 2018. Comput Struct Biotechnol J. 2018. PMID: 30275937 Free PMC article. Review.

5

A Central Edge Selection Based Overlapping Community Detection Algorithm for the Detection of Overlapping Structures in Protein⁻Protein Interaction Networks.

Zhang F, Ma A, Wang Z, Ma Q, Liu B, Huang L, Wang Y. Zhang F, et al. Among authors: ma a, ma q. Molecules. 2018 Oct 13;23(10):2633. doi: 10.3390/molecules23102633. Molecules. 2018. PMID: 30322177 Free PMC article.

6

Protein-protein interaction sites prediction by ensemble random forests with synthetic minority oversampling technique.

Wang X, Yu B, Ma A, Chen C, Liu B, Ma Q. Wang X, et al. Among authors: ma a, ma q. Bioinformatics. 2019 Jul 15;35(14):2395-2402. doi: 10.1093/bioinformatics/bty995. Bioinformatics. 2019. PMID: 30520961 Free PMC article.

7

MetaQUBIC: a computational pipeline for gene-level functional profiling of metagenome and metatranscriptome.

Ma A, Sun M, McDermaid A, Liu B, Ma Q. Ma A, et al. Among authors: ma q. Bioinformatics. 2019 Nov 1;35(21):4474-4477. doi: 10.1093/bioinformatics/btz414. Bioinformatics. 2019. PMID: 31116375 Free PMC article.

8

Clustering and classification methods for single-cell RNA-sequencing data.

Qi R, Ma A, Ma Q, Zou Q. Qi R, et al. Among authors: ma a, ma q. Brief Bioinform. 2020 Jul 15;21(4):1196-1208. doi: 10.1093/bib/bbz062. Brief Bioinform. 2020. PMID: 31271412 Free PMC article. Review.

9

Prediction of regulatory motifs from human Chip-sequencing data using a deep learning framework.

Yang J, Ma A, Hoppe AD, Wang C, Li Y, Zhang C, Wang Y, Liu B, Ma Q. Yang J, et al. Among authors: ma a, ma q. Nucleic Acids Res. 2019 Sep 5;47(15):7809-7824. doi: 10.1093/nar/gkz672. Nucleic Acids Res. 2019. PMID: 31372637 Free PMC article.

10

QUBIC2: a novel and robust biclustering algorithm for analyses and interpretation of large-scale RNA-Seq data.

Xie J, Ma A, Zhang Y, Liu B, Cao S, Wang C, Xu J, Zhang C, Ma Q. Xie J, et al. Among authors: ma a, ma q. Bioinformatics. 2020 Feb 15;36(4):1143-1149. doi: 10.1093/bioinformatics/btz692. Bioinformatics. 2020. PMID: 31503285 Free PMC article.

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