Aly KA - Search Results

1

Auxotrophic and prototrophic conditional genetic networks reveal the rewiring of transcription factors in Escherichia coli.

Gagarinova A, Hosseinnia A, Rahmatbakhsh M, Istace Z, Phanse S, Moutaoufik MT, Zilocchi M, Zhang Q, Aoki H, Jessulat M, Kim S, Aly KA, Babu M. Gagarinova A, et al. Among authors: aly ka. Nat Commun. 2022 Jul 14;13(1):4085. doi: 10.1038/s41467-022-31819-x. Nat Commun. 2022. PMID: 35835781 Free PMC article.

2

A Gaussian process-based definition reveals new and bona fide genetic interactions compared to a multiplicative model in the Gram-negative Escherichia coli.

Kumar A, Hosseinnia A, Gagarinova A, Phanse S, Kim S, Aly KA, Zilles S, Babu M. Kumar A, et al. Among authors: aly ka. Bioinformatics. 2020 Feb 1;36(3):880-889. doi: 10.1093/bioinformatics/btz673. Bioinformatics. 2020. PMID: 31504172 Free PMC article.

3

Insights into SACS pathological attributes in autosomal recessive spastic ataxia of Charlevoix-Saguenay (ARSACS)☆.

Aly KA, Moutaoufik MT, Zilocchi M, Phanse S, Babu M. Aly KA, et al. Curr Opin Chem Biol. 2022 Dec;71:102211. doi: 10.1016/j.cbpa.2022.102211. Epub 2022 Sep 17. Curr Opin Chem Biol. 2022. PMID: 36126381 Free article. Review.

4

Misconnecting the dots: altered mitochondrial protein-protein interactions and their role in neurodegenerative disorders.

Zilocchi M, Moutaoufik MT, Jessulat M, Phanse S, Aly KA, Babu M. Zilocchi M, et al. Among authors: aly ka. Expert Rev Proteomics. 2020 Feb;17(2):119-136. doi: 10.1080/14789450.2020.1723419. Epub 2020 Feb 6. Expert Rev Proteomics. 2020. PMID: 31986926 Review.

5

The conserved Tpk1 regulates non-homologous end joining double-strand break repair by phosphorylation of Nej1, a homolog of the human XLF.

Jessulat M, Amin S, Hooshyar M, Malty R, Moutaoufik MT, Zilocchi M, Istace Z, Phanse S, Aoki H, Omidi K, Burnside D, Samanfar B, Aly KA, Golshani A, Babu M. Jessulat M, et al. Among authors: aly ka. Nucleic Acids Res. 2021 Aug 20;49(14):8145-8160. doi: 10.1093/nar/gkab585. Nucleic Acids Res. 2021. PMID: 34244791 Free PMC article.

6

Mitochondria under the spotlight: On the implications of mitochondrial dysfunction and its connectivity to neuropsychiatric disorders.

Zilocchi M, Broderick K, Phanse S, Aly KA, Babu M. Zilocchi M, et al. Among authors: aly ka. Comput Struct Biotechnol J. 2020 Sep 14;18:2535-2546. doi: 10.1016/j.csbj.2020.09.008. eCollection 2020. Comput Struct Biotechnol J. 2020. PMID: 33033576 Free PMC article. Review.

7

From fuzziness to precision medicine: on the rapidly evolving proteomics with implications in mitochondrial connectivity to rare human disease.

Aly KA, Moutaoufik MT, Phanse S, Zhang Q, Babu M. Aly KA, et al. iScience. 2021 Jan 6;24(2):102030. doi: 10.1016/j.isci.2020.102030. eCollection 2021 Feb 19. iScience. 2021. PMID: 33521598 Free PMC article. Review.

8

HERG channel and cancer: A mechanistic review of carcinogenic processes and therapeutic potential.

He S, Moutaoufik MT, Islam S, Persad A, Wu A, Aly KA, Fonge H, Babu M, Cayabyab FS. He S, et al. Among authors: aly ka. Biochim Biophys Acta Rev Cancer. 2020 Apr;1873(2):188355. doi: 10.1016/j.bbcan.2020.188355. Epub 2020 Mar 2. Biochim Biophys Acta Rev Cancer. 2020. PMID: 32135169 Review.

9

A computational approach to rapidly design peptides that detect SARS-CoV-2 surface protein S.

Hajikarimlou M, Hooshyar M, Moutaoufik MT, Aly KA, Azad T, Takallou S, Jagadeesan S, Phanse S, Said KB, Samanfar B, Bell JC, Dehne F, Babu M, Golshani A. Hajikarimlou M, et al. Among authors: aly ka. NAR Genom Bioinform. 2022 Aug 22;4(3):lqac058. doi: 10.1093/nargab/lqac058. eCollection 2022 Sep. NAR Genom Bioinform. 2022. PMID: 36004308 Free PMC article.

10

Identification of the VirB4-VirB8-VirB5-VirB2 pilus assembly sequence of type IV secretion systems.

Yuan Q, Carle A, Gao C, Sivanesan D, Aly KA, Höppner C, Krall L, Domke N, Baron C. Yuan Q, et al. Among authors: aly ka. J Biol Chem. 2005 Jul 15;280(28):26349-59. doi: 10.1074/jbc.M502347200. Epub 2005 May 18. J Biol Chem. 2005. PMID: 15901731 Free article.

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