Freeman TC - Search Results

1

Graphia: A platform for the graph-based visualisation and analysis of high dimensional data.

Freeman TC, Horsewell S, Patir A, Harling-Lee J, Regan T, Shih BB, Prendergast J, Hume DA, Angus T. Freeman TC, et al. PLoS Comput Biol. 2022 Jul 25;18(7):e1010310. doi: 10.1371/journal.pcbi.1010310. eCollection 2022 Jul. PLoS Comput Biol. 2022. PMID: 35877685 Free PMC article.

2

Transcriptomic analysis of mononuclear phagocyte differentiation and activation.

Hume DA, Freeman TC. Hume DA, et al. Among authors: freeman tc. Immunol Rev. 2014 Nov;262(1):74-84. doi: 10.1111/imr.12211. Immunol Rev. 2014. PMID: 25319328 Review.

3

A graphical and computational modeling platform for biological pathways.

Livigni A, O'Hara L, Polak ME, Angus T, Wright DW, Smith LB, Freeman TC. Livigni A, et al. Among authors: freeman tc. Nat Protoc. 2018 Apr;13(4):705-722. doi: 10.1038/nprot.2017.144. Epub 2018 Mar 15. Nat Protoc. 2018. PMID: 29543794 Free article.

4

A graph-based approach for the visualisation and analysis of bacterial pangenomes.

Harling-Lee JD, Gorzynski J, Yebra G, Angus T, Fitzgerald JR, Freeman TC. Harling-Lee JD, et al. Among authors: freeman tc. BMC Bioinformatics. 2022 Oct 8;23(1):416. doi: 10.1186/s12859-022-04898-2. BMC Bioinformatics. 2022. PMID: 36209064 Free PMC article.

5

Visualisation of BioPAX Networks using BioLayout Express (3D).

Wright DW, Angus T, Enright AJ, Freeman TC. Wright DW, et al. Among authors: freeman tc. F1000Res. 2014 Oct 20;3:246. doi: 10.12688/f1000research.5499.1. eCollection 2014. F1000Res. 2014. PMID: 25949802 Free PMC article.

6

Modelling the Structure and Dynamics of Biological Pathways.

O'Hara L, Livigni A, Theo T, Boyer B, Angus T, Wright D, Chen SH, Raza S, Barnett MW, Digard P, Smith LB, Freeman TC. O'Hara L, et al. Among authors: freeman tc. PLoS Biol. 2016 Aug 10;14(8):e1002530. doi: 10.1371/journal.pbio.1002530. eCollection 2016 Aug. PLoS Biol. 2016. PMID: 27509052 Free PMC article.

7

Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumors.

Nirmal AJ, Regan T, Shih BB, Hume DA, Sims AH, Freeman TC. Nirmal AJ, et al. Among authors: freeman tc. Cancer Immunol Res. 2018 Nov;6(11):1388-1400. doi: 10.1158/2326-6066.CIR-18-0342. Epub 2018 Sep 28. Cancer Immunol Res. 2018. PMID: 30266715

8

A core transcriptional signature of human microglia: Derivation and utility in describing region-dependent alterations associated with Alzheimer's disease.

Patir A, Shih B, McColl BW, Freeman TC. Patir A, et al. Among authors: freeman tc. Glia. 2019 Jul;67(7):1240-1253. doi: 10.1002/glia.23572. Epub 2019 Feb 13. Glia. 2019. PMID: 30758077 Review.

9

Visualization and analysis of RNA-Seq assembly graphs.

Nazarie FW, Shih B, Angus T, Barnett MW, Chen SH, Summers KM, Klein K, Faulkner GJ, Saini HK, Watson M, Dongen SV, Enright AJ, Freeman TC. Nazarie FW, et al. Among authors: freeman tc. Nucleic Acids Res. 2019 Aug 22;47(14):7262-7275. doi: 10.1093/nar/gkz599. Nucleic Acids Res. 2019. PMID: 31305886 Free PMC article.

10

An expression atlas of human primary cells: inference of gene function from coexpression networks.

Mabbott NA, Baillie JK, Brown H, Freeman TC, Hume DA. Mabbott NA, et al. Among authors: freeman tc. BMC Genomics. 2013 Sep 20;14:632. doi: 10.1186/1471-2164-14-632. BMC Genomics. 2013. PMID: 24053356 Free PMC article.

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