Li J - Search Results

1

Sampling and ranking spatial transcriptomics data embeddings to identify tissue architecture.

Lin Y, Wang Y, Liang Y, Yu Y, Li J, Ma Q, He F, Xu D. Lin Y, et al. Among authors: li j. Front Genet. 2022 Aug 12;13:912813. doi: 10.3389/fgene.2022.912813. eCollection 2022. Front Genet. 2022. PMID: 36035139 Free PMC article.

2

MusiteDeep: a deep-learning based webserver for protein post-translational modification site prediction and visualization.

Wang D, Liu D, Yuchi J, He F, Jiang Y, Cai S, Li J, Xu D. Wang D, et al. Among authors: li j. Nucleic Acids Res. 2020 Jul 2;48(W1):W140-W146. doi: 10.1093/nar/gkaa275. Nucleic Acids Res. 2020. PMID: 32324217 Free PMC article.

3

An Ensemble Deep Learning based Predictor for Simultaneously Identifying Protein Ubiquitylation and SUMOylation Sites.

He F, Li J, Wang R, Zhao X, Han Y. He F, et al. Among authors: li j. BMC Bioinformatics. 2021 Oct 24;22(1):519. doi: 10.1186/s12859-021-04445-5. BMC Bioinformatics. 2021. PMID: 34689734 Free PMC article.

4

Define and visualize pathological architectures of human tissues from spatially resolved transcriptomics using deep learning.

Chang Y, He F, Wang J, Chen S, Li J, Liu J, Yu Y, Su L, Ma A, Allen C, Lin Y, Sun S, Liu B, Javier Otero J, Chung D, Fu H, Li Z, Xu D, Ma Q. Chang Y, et al. Among authors: li j, li z. Comput Struct Biotechnol J. 2022 Aug 24;20:4600-4617. doi: 10.1016/j.csbj.2022.08.029. eCollection 2022. Comput Struct Biotechnol J. 2022. PMID: 36090815 Free PMC article.

5

An end-to-end heterogeneous graph representation learning-based framework for drug-target interaction prediction.

Peng J, Wang Y, Guan J, Li J, Han R, Hao J, Wei Z, Shang X. Peng J, et al. Among authors: li j. Brief Bioinform. 2021 Sep 2;22(5):bbaa430. doi: 10.1093/bib/bbaa430. Brief Bioinform. 2021. PMID: 33517357

6

DeepRisk: A deep learning approach for genome-wide assessment of common disease risk.

Peng J, Bao Z, Li J, Han R, Wang Y, Han L, Peng J, Wang T, Hao J, Wei Z, Shang X. Peng J, et al. Among authors: li j. Fundam Res. 2024 Mar 19;4(4):752-760. doi: 10.1016/j.fmre.2024.02.015. eCollection 2024 Jul. Fundam Res. 2024. PMID: 39156563 Free PMC article.

7

Identifying complex motifs in massive omics data with a variable-convolutional layer in deep neural network.

Li JY, Jin S, Tu XM, Ding Y, Gao G. Li JY, et al. Brief Bioinform. 2021 Nov 5;22(6):bbab233. doi: 10.1093/bib/bbab233. Brief Bioinform. 2021. PMID: 34219140

8

A review and performance evaluation of clustering frameworks for single-cell Hi-C data.

Zhen C, Wang Y, Geng J, Han L, Li J, Peng J, Wang T, Hao J, Shang X, Wei Z, Zhu P, Peng J. Zhen C, et al. Among authors: li j. Brief Bioinform. 2022 Nov 19;23(6):bbac385. doi: 10.1093/bib/bbac385. Brief Bioinform. 2022. PMID: 36151714

9

A learning-based method for drug-target interaction prediction based on feature representation learning and deep neural network.

Peng J, Li J, Shang X. Peng J, et al. Among authors: li j. BMC Bioinformatics. 2020 Sep 17;21(Suppl 13):394. doi: 10.1186/s12859-020-03677-1. BMC Bioinformatics. 2020. PMID: 32938374 Free PMC article.

10

Microbe-disease associations prediction by graph regularized non-negative matrix factorization with

L_{2, 1}

norm regularization terms.

Chen Z, Zhang L, Li J, Chen H. Chen Z, et al. Among authors: li j. J Cell Mol Med. 2024 Sep;28(17):e18553. doi: 10.1111/jcmm.18553. J Cell Mol Med. 2024. PMID: 39239860 Free PMC article.

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