Vilo J - Search Results

1

Omics-informed CNV calls reduce false-positive rates and improve power for CNV-trait associations.

Lepamets M, Auwerx C, Nõukas M, Claringbould A, Porcu E, Kals M, Jürgenson T; Estonian Biobank Research Team; Morris AP, Võsa U, Bochud M, Stringhini S, Wijmenga C, Franke L, Peterson H, Vilo J, Lepik K, Mägi R, Kutalik Z. Lepamets M, et al. Among authors: vilo j. HGG Adv. 2022 Aug 1;3(4):100133. doi: 10.1016/j.xhgg.2022.100133. eCollection 2022 Oct 13. HGG Adv. 2022. PMID: 36035246 Free PMC article.

2

g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experiments.

Reimand J, Kull M, Peterson H, Hansen J, Vilo J. Reimand J, et al. Among authors: vilo j. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W193-200. doi: 10.1093/nar/gkm226. Epub 2007 May 3. Nucleic Acids Res. 2007. PMID: 17478515 Free PMC article.

3

KEGGanim: pathway animations for high-throughput data.

Adler P, Reimand J, Jänes J, Kolde R, Peterson H, Vilo J. Adler P, et al. Among authors: vilo j. Bioinformatics. 2008 Feb 15;24(4):588-90. doi: 10.1093/bioinformatics/btm581. Epub 2007 Dec 1. Bioinformatics. 2008. PMID: 18056068

4

GraphWeb: mining heterogeneous biological networks for gene modules with functional significance.

Reimand J, Tooming L, Peterson H, Adler P, Vilo J. Reimand J, et al. Among authors: vilo j. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W452-9. doi: 10.1093/nar/gkn230. Epub 2008 May 6. Nucleic Acids Res. 2008. PMID: 18460544 Free PMC article.

5

Ranking genes by their co-expression to subsets of pathway members.

Adler P, Peterson H, Agius P, Reimand J, Vilo J. Adler P, et al. Among authors: vilo j. Ann N Y Acad Sci. 2009 Mar;1158:1-13. doi: 10.1111/j.1749-6632.2008.03747.x. Ann N Y Acad Sci. 2009. PMID: 19348627

6

VisHiC--hierarchical functional enrichment analysis of microarray data.

Krushevskaya D, Peterson H, Reimand J, Kull M, Vilo J. Krushevskaya D, et al. Among authors: vilo j. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W587-92. doi: 10.1093/nar/gkp435. Epub 2009 May 29. Nucleic Acids Res. 2009. PMID: 19483095 Free PMC article.

7

Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods.

Adler P, Kolde R, Kull M, Tkachenko A, Peterson H, Reimand J, Vilo J. Adler P, et al. Among authors: vilo j. Genome Biol. 2009;10(12):R139. doi: 10.1186/gb-2009-10-12-r139. Epub 2009 Dec 4. Genome Biol. 2009. PMID: 19961599 Free PMC article.

8

Genome-wide promoter analysis of histone modifications in human monocyte-derived antigen presenting cells.

Tserel L, Kolde R, Rebane A, Kisand K, Org T, Peterson H, Vilo J, Peterson P. Tserel L, et al. Among authors: vilo j. BMC Genomics. 2010 Nov 18;11:642. doi: 10.1186/1471-2164-11-642. BMC Genomics. 2010. PMID: 21087476 Free PMC article.

9

Identification of miR-374a as a prognostic marker for survival in patients with early-stage nonsmall cell lung cancer.

Võsa U, Vooder T, Kolde R, Fischer K, Välk K, Tõnisson N, Roosipuu R, Vilo J, Metspalu A, Annilo T. Võsa U, et al. Among authors: vilo j. Genes Chromosomes Cancer. 2011 Oct;50(10):812-22. doi: 10.1002/gcc.20902. Epub 2011 Jul 11. Genes Chromosomes Cancer. 2011. PMID: 21748820

10

Meta-analysis of microRNA expression in lung cancer.

Võsa U, Vooder T, Kolde R, Vilo J, Metspalu A, Annilo T. Võsa U, et al. Among authors: vilo j. Int J Cancer. 2013 Jun 15;132(12):2884-93. doi: 10.1002/ijc.27981. Epub 2012 Dec 27. Int J Cancer. 2013. PMID: 23225545

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