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RNA-sequencing and mass-spectrometry proteomic time-series analysis of T-cell differentiation identified multiple splice variants models that predicted validated protein biomarkers in inflammatory diseases.
Magnusson R, Rundquist O, Kim MJ, Hellberg S, Na CH, Benson M, Gomez-Cabrero D, Kockum I, Tegnér JN, Piehl F, Jagodic M, Mellergård J, Altafini C, Ernerudh J, Jenmalm MC, Nestor CE, Kim MS, Gustafsson M. Magnusson R, et al. Front Mol Biosci. 2022 Aug 29;9:916128. doi: 10.3389/fmolb.2022.916128. eCollection 2022. Front Mol Biosci. 2022. PMID: 36106020 Free PMC article.
LASSIM-A network inference toolbox for genome-wide mechanistic modeling.
Magnusson R, Mariotti GP, Köpsén M, Lövfors W, Gawel DR, Jörnsten R, Linde J, Nordling TEM, Nyman E, Schulze S, Nestor CE, Zhang H, Cedersund G, Benson M, Tjärnberg A, Gustafsson M. Magnusson R, et al. PLoS Comput Biol. 2017 Jun 22;13(6):e1005608. doi: 10.1371/journal.pcbi.1005608. eCollection 2017 Jun. PLoS Comput Biol. 2017. PMID: 28640810 Free PMC article.
ComHub: Community predictions of hubs in gene regulatory networks.
Åkesson J, Lubovac-Pilav Z, Magnusson R, Gustafsson M. Åkesson J, et al. Among authors: magnusson r. BMC Bioinformatics. 2021 Feb 9;22(1):58. doi: 10.1186/s12859-021-03987-y. BMC Bioinformatics. 2021. PMID: 33563211 Free PMC article.
Progesterone Dampens Immune Responses in In Vitro Activated CD4+ T Cells and Affects Genes Associated With Autoimmune Diseases That Improve During Pregnancy.
Hellberg S, Raffetseder J, Rundquist O, Magnusson R, Papapavlou G, Jenmalm MC, Ernerudh J, Gustafsson M. Hellberg S, et al. Among authors: magnusson r. Front Immunol. 2021 May 12;12:672168. doi: 10.3389/fimmu.2021.672168. eCollection 2021. Front Immunol. 2021. PMID: 34054852 Free PMC article.
298 results