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Page 1
Repression and 3D-restructuring resolves regulatory conflicts in evolutionarily rearranged genomes.
Ringel AR, Szabo Q, Chiariello AM, Chudzik K, Schöpflin R, Rothe P, Mattei AL, Zehnder T, Harnett D, Laupert V, Bianco S, Hetzel S, Glaser J, Phan MHQ, Schindler M, Ibrahim DM, Paliou C, Esposito A, Prada-Medina CA, Haas SA, Giere P, Vingron M, Wittler L, Meissner A, Nicodemi M, Cavalli G, Bantignies F, Mundlos S, Robson MI. Ringel AR, et al. Among authors: nicodemi m. Cell. 2022 Sep 29;185(20):3689-3704.e21. doi: 10.1016/j.cell.2022.09.006. Cell. 2022. PMID: 36179666 Free PMC article.
Polymer models of chromatin organization.
Barbieri M, Scialdone A, Piccolo A, Chiariello AM, di Lanno C, Prisco A, Pombo A, Nicodemi M. Barbieri M, et al. Among authors: nicodemi m. Front Genet. 2013 Jun 20;4:113. doi: 10.3389/fgene.2013.00113. eCollection 2013. Front Genet. 2013. PMID: 23802011 Free PMC article. No abstract available.
Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation.
Fraser J, Ferrai C, Chiariello AM, Schueler M, Rito T, Laudanno G, Barbieri M, Moore BL, Kraemer DC, Aitken S, Xie SQ, Morris KJ, Itoh M, Kawaji H, Jaeger I, Hayashizaki Y, Carninci P, Forrest AR; FANTOM Consortium; Semple CA, Dostie J, Pombo A, Nicodemi M. Fraser J, et al. Among authors: nicodemi m. Mol Syst Biol. 2015 Dec 23;11(12):852. doi: 10.15252/msb.20156492. Mol Syst Biol. 2015. PMID: 26700852 Free PMC article.
Polymer physics of chromosome large-scale 3D organisation.
Chiariello AM, Annunziatella C, Bianco S, Esposito A, Nicodemi M. Chiariello AM, et al. Among authors: nicodemi m. Sci Rep. 2016 Jul 13;6:29775. doi: 10.1038/srep29775. Sci Rep. 2016. PMID: 27405443 Free PMC article.
Polymer Physics of the Large-Scale Structure of Chromatin.
Bianco S, Chiariello AM, Annunziatella C, Esposito A, Nicodemi M. Bianco S, et al. Among authors: nicodemi m. Methods Mol Biol. 2016;1480:201-6. doi: 10.1007/978-1-4939-6380-5_17. Methods Mol Biol. 2016. PMID: 27659986
Predicting chromatin architecture from models of polymer physics.
Bianco S, Chiariello AM, Annunziatella C, Esposito A, Nicodemi M. Bianco S, et al. Among authors: nicodemi m. Chromosome Res. 2017 Mar;25(1):25-34. doi: 10.1007/s10577-016-9545-5. Epub 2017 Jan 9. Chromosome Res. 2017. PMID: 28070687 Review.
Complex multi-enhancer contacts captured by genome architecture mapping.
Beagrie RA, Scialdone A, Schueler M, Kraemer DC, Chotalia M, Xie SQ, Barbieri M, de Santiago I, Lavitas LM, Branco MR, Fraser J, Dostie J, Game L, Dillon N, Edwards PA, Nicodemi M, Pombo A. Beagrie RA, et al. Among authors: nicodemi m. Nature. 2017 Mar 23;543(7646):519-524. doi: 10.1038/nature21411. Epub 2017 Mar 8. Nature. 2017. PMID: 28273065 Free PMC article.
108 results