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Highly-automated, high-throughput replication of yeast-based logic circuit design assessments.
Goldman RP, Moseley R, Roehner N, Cummins B, Vrana JD, Clowers KJ, Bryce D, Beal J, DeHaven M, Nowak J, Higa T, Biggers V, Lee P, Hunt JP, Mosqueda L, Haase SB, Weston M, Zheng G, Deckard A, Gopaulakrishnan S, Stubbs JF, Gaffney NI, Vaughn MW, Maheshri N, Mikhalev E, Bartley B, Markeloff R, Mitchell T, Nguyen T, Sumorok D, Walczak N, Myers C, Zundel Z, Hatch B, Scholz J, Colonna-Romano J. Goldman RP, et al. Among authors: zheng g. Synth Biol (Oxf). 2022 Oct 6;7(1):ysac018. doi: 10.1093/synbio/ysac018. eCollection 2022. Synth Biol (Oxf). 2022. PMID: 36285185 Free PMC article.
Prediction of whole-cell transcriptional response with machine learning.
Eslami M, Borujeni AE, Eramian H, Weston M, Zheng G, Urrutia J, Corbet C, Becker D, Maschhoff P, Clowers K, Cristofaro A, Hosseini HD, Gordon DB, Dorfan Y, Singer J, Vaughn M, Gaffney N, Fonner J, Stubbs J, Voigt CA, Yeung E. Eslami M, et al. Among authors: zheng g. Bioinformatics. 2022 Jan 3;38(2):404-409. doi: 10.1093/bioinformatics/btab676. Bioinformatics. 2022. PMID: 34570169
Round Trip: An Automated Pipeline for Experimental Design, Execution, and Analysis.
Bryce D, Goldman RP, DeHaven M, Beal J, Bartley B, Nguyen TT, Walczak N, Weston M, Zheng G, Nowak J, Lee P, Stubbs J, Gaffney N, Vaughn MW, Myers CJ, Moseley RC, Haase S, Deckard A, Cummins B, Leiby N. Bryce D, et al. Among authors: zheng g. ACS Synth Biol. 2022 Feb 18;11(2):608-622. doi: 10.1021/acssynbio.1c00305. Epub 2022 Jan 31. ACS Synth Biol. 2022. PMID: 35099189
A toolkit for enhanced reproducibility of RNASeq analysis for synthetic biologists.
Garcia BJ, Urrutia J, Zheng G, Becker D, Corbet C, Maschhoff P, Cristofaro A, Gaffney N, Vaughn M, Saxena U, Chen YP, Gordon DB, Eslami M. Garcia BJ, et al. Among authors: zheng g. Synth Biol (Oxf). 2022 Aug 23;7(1):ysac012. doi: 10.1093/synbio/ysac012. eCollection 2022. Synth Biol (Oxf). 2022. PMID: 36035514 Free PMC article.
Robustness and reproducibility of simple and complex synthetic logic circuit designs using a DBTL loop.
Cummins B, Vrana J, Moseley RC, Eramian H, Deckard A, Fontanarrosa P, Bryce D, Weston M, Zheng G, Nowak J, Motta FC, Eslami M, Johnson KL, Goldman RP, Myers CJ, Johnson T, Vaughn MW, Gaffney N, Urrutia J, Gopaulakrishnan S, Biggers V, Higa TR, Mosqueda LA, Gameiro M, Gedeon T, Mischaikow K, Beal J, Bartley B, Mitchell T, Nguyen TT, Roehner N, Haase SB. Cummins B, et al. Among authors: zheng g. Synth Biol (Oxf). 2023 Mar 28;8(1):ysad005. doi: 10.1093/synbio/ysad005. eCollection 2023. Synth Biol (Oxf). 2023. PMID: 37073283 Free PMC article.
Genetic Association of Juvenile Idiopathic Arthritis With Adult Rheumatic Disease.
Fan J, Hao J, Fu Y, Liu X, Qu HQ, Glessner JT, Ji D, Liu W, Zheng G, Ding Z, Cui S, Xia Q, Hakonarson H, Wei W, Li J. Fan J, et al. Among authors: zheng g. JAMA Netw Open. 2024 Dec 2;7(12):e2451341. doi: 10.1001/jamanetworkopen.2024.51341. JAMA Netw Open. 2024. PMID: 39729320 Free PMC article.
6,057 results