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Page 1
Towards increased accuracy and reproducibility in SARS-CoV-2 next generation sequence analysis for public health surveillance.
Connor R, Yarmosh DA, Maier W, Shakya M, Martin R, Bradford R, Brister JR, Chain PS, Copeland CA, di Iulio J, Hu B, Ebert P, Gunti J, Jin Y, Katz KS, Kochergin A, LaRosa T, Li J, Li PE, Lo CC, Rashid S, Maiorova ES, Xiao C, Zalunin V, Pruitt KD. Connor R, et al. Among authors: brister jr. bioRxiv [Preprint]. 2022 Nov 3:2022.11.03.515010. doi: 10.1101/2022.11.03.515010. bioRxiv. 2022. Update in: Viruses. 2024 Mar 11;16(3):430. doi: 10.3390/v16030430 PMID: 36380755 Free PMC article. Updated. Preprint.
Database resources of the National Center for Biotechnology Information.
Sayers EW, Beck J, Bolton EE, Brister JR, Chan J, Comeau DC, Connor R, DiCuccio M, Farrell CM, Feldgarden M, Fine AM, Funk K, Hatcher E, Hoeppner M, Kane M, Kannan S, Katz KS, Kelly C, Klimke W, Kim S, Kimchi A, Landrum M, Lathrop S, Lu Z, Malheiro A, Marchler-Bauer A, Murphy TD, Phan L, Prasad AB, Pujar S, Sawyer A, Schmieder E, Schneider VA, Schoch CL, Sharma S, Thibaud-Nissen F, Trawick BW, Venkatapathi T, Wang J, Pruitt KD, Sherry ST. Sayers EW, et al. Among authors: brister jr. Nucleic Acids Res. 2024 Jan 5;52(D1):D33-D43. doi: 10.1093/nar/gkad1044. Nucleic Acids Res. 2024. PMID: 37994677 Free PMC article.
Recommendations for Uniform Variant Calling of SARS-CoV-2 Genome Sequence across Bioinformatic Workflows.
Connor R, Shakya M, Yarmosh DA, Maier W, Martin R, Bradford R, Brister JR, Chain PSG, Copeland CA, di Iulio J, Hu B, Ebert P, Gunti J, Jin Y, Katz KS, Kochergin A, LaRosa T, Li J, Li PE, Lo CC, Rashid S, Maiorova ES, Xiao C, Zalunin V, Purcell L, Pruitt KD. Connor R, et al. Among authors: brister jr. Viruses. 2024 Mar 11;16(3):430. doi: 10.3390/v16030430. Viruses. 2024. PMID: 38543795 Free PMC article.
Database resources of the National Center for Biotechnology Information in 2025.
Sayers EW, Beck J, Bolton EE, Brister JR, Chan J, Connor R, Feldgarden M, Fine AM, Funk K, Hoffman J, Kannan S, Kelly C, Klimke W, Kim S, Lathrop S, Marchler-Bauer A, Murphy TD, O'Sullivan C, Schmieder E, Skripchenko Y, Stine A, Thibaud-Nissen F, Wang J, Ye J, Zellers E, Schneider VA, Pruitt KD. Sayers EW, et al. Among authors: brister jr. Nucleic Acids Res. 2025 Jan 6;53(D1):D20-D29. doi: 10.1093/nar/gkae979. Nucleic Acids Res. 2025. PMID: 39526373 Free PMC article.
NCBI RefSeq: reference sequence standards through 25 years of curation and annotation.
Goldfarb T, Kodali VK, Pujar S, Brover V, Robbertse B, Farrell CM, Oh DH, Astashyn A, Ermolaeva O, Haddad D, Hlavina W, Hoffman J, Jackson JD, Joardar VS, Kristensen D, Masterson P, McGarvey KM, McVeigh R, Mozes E, Murphy MR, Schafer SS, Souvorov A, Spurrier B, Strope PK, Sun H, Vatsan AR, Wallin C, Webb D, Brister JR, Hatcher E, Kimchi A, Klimke W, Marchler-Bauer A, Pruitt KD, Thibaud-Nissen F, Murphy TD. Goldfarb T, et al. Among authors: brister jr. Nucleic Acids Res. 2025 Jan 6;53(D1):D243-D257. doi: 10.1093/nar/gkae1038. Nucleic Acids Res. 2025. PMID: 39526381 Free PMC article.
Database resources of the National Center for Biotechnology Information in 2023.
Sayers EW, Bolton EE, Brister JR, Canese K, Chan J, Comeau DC, Farrell CM, Feldgarden M, Fine AM, Funk K, Hatcher E, Kannan S, Kelly C, Kim S, Klimke W, Landrum MJ, Lathrop S, Lu Z, Madden TL, Malheiro A, Marchler-Bauer A, Murphy TD, Phan L, Pujar S, Rangwala SH, Schneider VA, Tse T, Wang J, Ye J, Trawick BW, Pruitt KD, Sherry ST. Sayers EW, et al. Among authors: brister jr. Nucleic Acids Res. 2023 Jan 6;51(D1):D29-D38. doi: 10.1093/nar/gkac1032. Nucleic Acids Res. 2023. PMID: 36370100 Free PMC article.
Putting everything in its place: using the INSDC compliant Pathogen Data Object Model to better structure genomic data submitted for public health applications.
Timme RE, Karsch-Mizrachi I, Waheed Z, Arita M, MacCannell D, Maguire F, Petit Iii R, Page AJ, Mendes CI, Nasar MI, Oluniyi P, Tyler AD, Raphenya AR, Guthrie JL, Olawoye I, Rinck G, O'Cathail C, Lees J, Cochrane G, Cummins C, Brister JR, Klimke W, Feldgarden M, Griffiths E. Timme RE, et al. Among authors: brister jr. Microb Genom. 2023 Dec;9(12):001145. doi: 10.1099/mgen.0.001145. Microb Genom. 2023. PMID: 38085797 Free PMC article.
Author Correction: Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification.
Adriaenssens EM, Roux S, Brister JR, Karsch-Mizrachi I, Kuhn JH, Varsani A, Yigang T, Reyes A, Lood C, Lefkowitz EJ, Sullivan MB, Edwards RA, Simmonds P, Rubino L, Sabanadzovic S, Krupovic M, Dutilh BE. Adriaenssens EM, et al. Among authors: brister jr. Nat Biotechnol. 2023 Sep;41(9):1346. doi: 10.1038/s41587-023-01952-z. Nat Biotechnol. 2023. PMID: 37608068 No abstract available.
59 results