Lindorff-Larsen K - Search Results

1

Lynch syndrome, molecular mechanisms and variant classification.

Abildgaard AB, Nielsen SV, Bernstein I, Stein A, Lindorff-Larsen K, Hartmann-Petersen R. Abildgaard AB, et al. Br J Cancer. 2023 Mar;128(5):726-734. doi: 10.1038/s41416-022-02059-z. Epub 2022 Nov 24. Br J Cancer. 2023. PMID: 36434153 Free PMC article. Review.

2

DNA-binding protects p53 from interactions with cofactors involved in transcription-independent functions.

Lambrughi M, De Gioia L, Gervasio FL, Lindorff-Larsen K, Nussinov R, Urani C, Bruschi M, Papaleo E. Lambrughi M, et al. Nucleic Acids Res. 2016 Nov 2;44(19):9096-9109. doi: 10.1093/nar/gkw770. Epub 2016 Sep 6. Nucleic Acids Res. 2016. PMID: 27604871 Free PMC article.

3

Variational Optimization of an All-Atom Implicit Solvent Force Field to Match Explicit Solvent Simulation Data.

Bottaro S, Lindorff-Larsen K, Best RB. Bottaro S, et al. J Chem Theory Comput. 2013 Dec 10;9(12):5641-5652. doi: 10.1021/ct400730n. J Chem Theory Comput. 2013. PMID: 24748852 Free PMC article.

4

Systematic validation of protein force fields against experimental data.

Lindorff-Larsen K, Maragakis P, Piana S, Eastwood MP, Dror RO, Shaw DE. Lindorff-Larsen K, et al. PLoS One. 2012;7(2):e32131. doi: 10.1371/journal.pone.0032131. Epub 2012 Feb 22. PLoS One. 2012. PMID: 22384157 Free PMC article.

5

Structure and dynamics of an unfolded protein examined by molecular dynamics simulation.

Lindorff-Larsen K, Trbovic N, Maragakis P, Piana S, Shaw DE. Lindorff-Larsen K, et al. J Am Chem Soc. 2012 Feb 29;134(8):3787-91. doi: 10.1021/ja209931w. Epub 2012 Feb 16. J Am Chem Soc. 2012. PMID: 22339051

6

Evaluating the effects of cutoffs and treatment of long-range electrostatics in protein folding simulations.

Piana S, Lindorff-Larsen K, Dirks RM, Salmon JK, Dror RO, Shaw DE. Piana S, et al. PLoS One. 2012;7(6):e39918. doi: 10.1371/journal.pone.0039918. Epub 2012 Jun 29. PLoS One. 2012. PMID: 22768169 Free PMC article.

7

Combining experiments and simulations using the maximum entropy principle.

Boomsma W, Ferkinghoff-Borg J, Lindorff-Larsen K. Boomsma W, et al. PLoS Comput Biol. 2014 Feb 20;10(2):e1003406. doi: 10.1371/journal.pcbi.1003406. eCollection 2014 Feb. PLoS Comput Biol. 2014. PMID: 24586124 Free PMC article. Review.

8

Thiol alkylation below neutral pH.

Lindorff-Larsen K, Winther JR. Lindorff-Larsen K, et al. Anal Biochem. 2000 Nov 15;286(2):308-10. doi: 10.1006/abio.2000.4807. Anal Biochem. 2000. PMID: 11067758 No abstract available.

9

Atomistic description of the folding of a dimeric protein.

Piana S, Lindorff-Larsen K, Shaw DE. Piana S, et al. J Phys Chem B. 2013 Oct 24;117(42):12935-42. doi: 10.1021/jp4020993. Epub 2013 Aug 15. J Phys Chem B. 2013. PMID: 23882999 Free article.

10

Parallel protein-unfolding pathways revealed and mapped.

Wright CF, Lindorff-Larsen K, Randles LG, Clarke J. Wright CF, et al. Nat Struct Biol. 2003 Aug;10(8):658-62. doi: 10.1038/nsb947. Nat Struct Biol. 2003. PMID: 12833152

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