Noyes MB - Search Results

1

A universal deep-learning model for zinc finger design enables transcription factor reprogramming.

Ichikawa DM, Abdin O, Alerasool N, Kogenaru M, Mueller AL, Wen H, Giganti DO, Goldberg GW, Adams S, Spencer JM, Razavi R, Nim S, Zheng H, Gionco C, Clark FT, Strokach A, Hughes TR, Lionnet T, Taipale M, Kim PM, Noyes MB. Ichikawa DM, et al. Among authors: noyes mb. Nat Biotechnol. 2023 Aug;41(8):1117-1129. doi: 10.1038/s41587-022-01624-4. Epub 2023 Jan 26. Nat Biotechnol. 2023. PMID: 36702896 Free PMC article.

2

A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system.

Noyes MB, Meng X, Wakabayashi A, Sinha S, Brodsky MH, Wolfe SA. Noyes MB, et al. Nucleic Acids Res. 2008 May;36(8):2547-60. doi: 10.1093/nar/gkn048. Epub 2008 Mar 10. Nucleic Acids Res. 2008. PMID: 18332042 Free PMC article.

3

Understanding DNA-binding specificity by bacteria hybrid selection.

Xu DJ, Noyes MB. Xu DJ, et al. Among authors: noyes mb. Brief Funct Genomics. 2015 Jan;14(1):3-16. doi: 10.1093/bfgp/elu048. Epub 2014 Dec 23. Brief Funct Genomics. 2015. PMID: 25539837 Review.

4

Synthetic gene expression perturbation systems with rapid, tunable, single-gene specificity in yeast.

McIsaac RS, Oakes BL, Wang X, Dummit KA, Botstein D, Noyes MB. McIsaac RS, et al. Among authors: noyes mb. Nucleic Acids Res. 2013 Feb 1;41(4):e57. doi: 10.1093/nar/gks1313. Epub 2012 Dec 28. Nucleic Acids Res. 2013. PMID: 23275543 Free PMC article.

5

Brain and cancer associated binding domain mutations provide insight into CTCF's relationship with chromatin and its contribution to gene regulation.

Do C, Jiang G, Cova G, Katsifis CC, Narducci DN, Sakellaropoulos T, Vidal R, Lhoumaud P, Tsirigos A, Regis FFD, Kakabadze N, Nora EP, Noyes M, Hansen AS, Skok JA. Do C, et al. bioRxiv [Preprint]. 2024 Sep 25:2024.01.11.575070. doi: 10.1101/2024.01.11.575070. bioRxiv. 2024. PMID: 38370764 Free PMC article. Preprint.

6

Analysis of specific protein-DNA interactions by bacterial one-hybrid assay.

Noyes MB. Noyes MB. Methods Mol Biol. 2012;786:79-95. doi: 10.1007/978-1-61779-292-2_5. Methods Mol Biol. 2012. PMID: 21938621

7

Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites.

Noyes MB, Christensen RG, Wakabayashi A, Stormo GD, Brodsky MH, Wolfe SA. Noyes MB, et al. Cell. 2008 Jun 27;133(7):1277-89. doi: 10.1016/j.cell.2008.05.023. Cell. 2008. PMID: 18585360 Free PMC article.

8

Rapid synthesis and screening of chemically activated transcription factors with GFP-based reporters.

McIsaac RS, Oakes BL, Botstein D, Noyes MB. McIsaac RS, et al. Among authors: noyes mb. J Vis Exp. 2013 Nov 26;(81):e51153. doi: 10.3791/51153. J Vis Exp. 2013. PMID: 24300440 Free PMC article.

9

Multi-reporter selection for the design of active and more specific zinc-finger nucleases for genome editing.

Oakes BL, Xia DF, Rowland EF, Xu DJ, Ankoudinova I, Borchardt JS, Zhang L, Li P, Miller JC, Rebar EJ, Noyes MB. Oakes BL, et al. Among authors: noyes mb. Nat Commun. 2016 Jan 7;7:10194. doi: 10.1038/ncomms10194. Nat Commun. 2016. PMID: 26738816 Free PMC article.

10

A Multireporter Bacterial 2-Hybrid Assay for the High-Throughput and Dynamic Assay of PDZ Domain-Peptide Interactions.

Ichikawa DM, Corbi-Verge C, Shen MJ, Snider J, Wong V, Stagljar I, Kim PM, Noyes MB. Ichikawa DM, et al. Among authors: noyes mb. ACS Synth Biol. 2019 May 17;8(5):918-928. doi: 10.1021/acssynbio.8b00499. Epub 2019 Apr 18. ACS Synth Biol. 2019. PMID: 30969105 Free PMC article.

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