Sillitoe I - Search Results

1

ModelCIF: An Extension of PDBx/mmCIF Data Representation for Computed Structure Models.

Vallat B, Tauriello G, Bienert S, Haas J, Webb BM, Žídek A, Zheng W, Peisach E, Piehl DW, Anischanka I, Sillitoe I, Tolchard J, Varadi M, Baker D, Orengo C, Zhang Y, Hoch JC, Kurisu G, Patwardhan A, Velankar S, Burley SK, Sali A, Schwede T, Berman HM, Westbrook JD. Vallat B, et al. Among authors: sillitoe i. J Mol Biol. 2023 Jul 15;435(14):168021. doi: 10.1016/j.jmb.2023.168021. Epub 2023 Feb 23. J Mol Biol. 2023. PMID: 36828268 Free PMC article.

2

Analysis and assessment of ab initio three-dimensional prediction, secondary structure, and contacts prediction.

Orengo CA, Bray JE, Hubbard T, LoConte L, Sillitoe I. Orengo CA, et al. Among authors: sillitoe i. Proteins. 1999;Suppl 3:149-70. doi: 10.1002/(sici)1097-0134(1999)37:3+<149::aid-prot20>3.3.co;2-8. Proteins. 1999. PMID: 10526364

3

Review: what can structural classifications reveal about protein evolution?

Orengo CA, Sillitoe I, Reeves G, Pearl FM. Orengo CA, et al. Among authors: sillitoe i. J Struct Biol. 2001 May-Jun;134(2-3):145-65. doi: 10.1006/jsbi.2001.4398. J Struct Biol. 2001. PMID: 11551176 Review.

4

Use of structure comparison methods for the refinement of protein structure predictions. I. Identifying the structural family of a protein from low-resolution models.

de la Cruz X, Sillitoe I, Orengo C. de la Cruz X, et al. Among authors: sillitoe i. Proteins. 2002 Jan 1;46(1):72-84. doi: 10.1002/prot.10002. Proteins. 2002. PMID: 11746704

5

Recognizing the fold of a protein structure.

Harrison A, Pearl F, Sillitoe I, Slidel T, Mott R, Thornton J, Orengo C. Harrison A, et al. Among authors: sillitoe i. Bioinformatics. 2003 Sep 22;19(14):1748-59. doi: 10.1093/bioinformatics/btg240. Bioinformatics. 2003. PMID: 14512345

6

Assessing strategies for improved superfamily recognition.

Sillitoe I, Dibley M, Bray J, Addou S, Orengo C. Sillitoe I, et al. Protein Sci. 2005 Jul;14(7):1800-10. doi: 10.1110/ps.041056105. Epub 2005 Jun 3. Protein Sci. 2005. PMID: 15937274 Free PMC article.

7

The CATH classification revisited--architectures reviewed and new ways to characterize structural divergence in superfamilies.

Cuff AL, Sillitoe I, Lewis T, Redfern OC, Garratt R, Thornton J, Orengo CA. Cuff AL, et al. Among authors: sillitoe i. Nucleic Acids Res. 2009 Jan;37(Database issue):D310-4. doi: 10.1093/nar/gkn877. Epub 2008 Nov 7. Nucleic Acids Res. 2009. PMID: 18996897 Free PMC article.

8

FLORA: a novel method to predict protein function from structure in diverse superfamilies.

Redfern OC, Dessailly BH, Dallman TJ, Sillitoe I, Orengo CA. Redfern OC, et al. Among authors: sillitoe i. PLoS Comput Biol. 2009 Aug;5(8):e1000485. doi: 10.1371/journal.pcbi.1000485. Epub 2009 Aug 28. PLoS Comput Biol. 2009. PMID: 19714201 Free PMC article.

9

The Gene3D Web Services: a platform for identifying, annotating and comparing structural domains in protein sequences.

Yeats C, Lees J, Carter P, Sillitoe I, Orengo C. Yeats C, et al. Among authors: sillitoe i. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W546-50. doi: 10.1093/nar/gkr438. Epub 2011 Jun 6. Nucleic Acids Res. 2011. PMID: 21646335 Free PMC article.

10

FunTree: a resource for exploring the functional evolution of structurally defined enzyme superfamilies.

Furnham N, Sillitoe I, Holliday GL, Cuff AL, Rahman SA, Laskowski RA, Orengo CA, Thornton JM. Furnham N, et al. Among authors: sillitoe i. Nucleic Acids Res. 2012 Jan;40(Database issue):D776-82. doi: 10.1093/nar/gkr852. Epub 2011 Oct 17. Nucleic Acids Res. 2012. PMID: 22006843 Free PMC article.

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