Joseph-McCarthy D - Search Results

1

Machine learning for the identification of respiratory viral attachment machinery from sequences data.

Walker KC, Shwarts M, Demidikin S, Chakravarty A, Joseph-McCarthy D. Walker KC, et al. Among authors: joseph mccarthy d. PLoS One. 2023 Mar 2;18(3):e0281642. doi: 10.1371/journal.pone.0281642. eCollection 2023. PLoS One. 2023. PMID: 36862685 Free PMC article.

2

Risk of rapid evolutionary escape from biomedical interventions targeting SARS-CoV-2 spike protein.

Van Egeren D, Novokhodko A, Stoddard M, Tran U, Zetter B, Rogers M, Pentelute BL, Carlson JM, Hixon M, Joseph-McCarthy D, Chakravarty A. Van Egeren D, et al. PLoS One. 2021 Apr 28;16(4):e0250780. doi: 10.1371/journal.pone.0250780. eCollection 2021. PLoS One. 2021. PMID: 33909660 Free PMC article.

3

Controlling long-term SARS-CoV-2 infections can slow viral evolution and reduce the risk of treatment failure.

Van Egeren D, Novokhodko A, Stoddard M, Tran U, Zetter B, Rogers MS, Joseph-McCarthy D, Chakravarty A. Van Egeren D, et al. Sci Rep. 2021 Nov 19;11(1):22630. doi: 10.1038/s41598-021-02148-8. Sci Rep. 2021. PMID: 34799659 Free PMC article.

4

Rapid relaxation of pandemic restrictions after vaccine rollout favors growth of SARS-CoV-2 variants: A model-based analysis.

Van Egeren D, Stoddard M, Novokhodko A, Rogers MS, Joseph-McCarthy D, Zetter B, Chakravarty A. Van Egeren D, et al. PLoS One. 2021 Nov 24;16(11):e0258997. doi: 10.1371/journal.pone.0258997. eCollection 2021. PLoS One. 2021. PMID: 34818335 Free PMC article.

5

Vaccines Alone Cannot Slow the Evolution of SARS-CoV-2.

Van Egeren D, Stoddard M, White LF, Hochberg NS, Rogers MS, Zetter B, Joseph-McCarthy D, Chakravarty A. Van Egeren D, et al. Among authors: joseph mccarthy d. Vaccines (Basel). 2023 Apr 16;11(4):853. doi: 10.3390/vaccines11040853. Vaccines (Basel). 2023. PMID: 37112765 Free PMC article.

6

Identification of a druggable site on GRP78 at the GRP78-SARS-CoV-2 interface and virtual screening of compounds to disrupt that interface.

Lazou M, Hutton JR, Chakravarty A, Joseph-McCarthy D. Lazou M, et al. Among authors: joseph mccarthy d. J Comput Aided Mol Des. 2024 Jan 24;38(1):6. doi: 10.1007/s10822-023-00546-w. J Comput Aided Mol Des. 2024. PMID: 38263499

7

Ensemble-based docking using biased molecular dynamics.

Campbell AJ, Lamb ML, Joseph-McCarthy D. Campbell AJ, et al. J Chem Inf Model. 2014 Jul 28;54(7):2127-38. doi: 10.1021/ci400729j. Epub 2014 Jun 18. J Chem Inf Model. 2014. PMID: 24881672

8

Fragment-based lead discovery and design.

Joseph-McCarthy D, Campbell AJ, Kern G, Moustakas D. Joseph-McCarthy D, et al. J Chem Inf Model. 2014 Mar 24;54(3):693-704. doi: 10.1021/ci400731w. Epub 2014 Feb 19. J Chem Inf Model. 2014. PMID: 24490951 Review.

9

Evaluating Free Energies of Binding and Conservation of Crystallographic Waters Using SZMAP.

Bayden AS, Moustakas DT, Joseph-McCarthy D, Lamb ML. Bayden AS, et al. J Chem Inf Model. 2015 Aug 24;55(8):1552-65. doi: 10.1021/ci500746d. Epub 2015 Aug 3. J Chem Inf Model. 2015. PMID: 26176600

10

Use of the multiple copy simultaneous search (MCSS) method to design a new class of picornavirus capsid binding drugs.

Joseph-McCarthy D, Hogle JM, Karplus M. Joseph-McCarthy D, et al. Proteins. 1997 Sep;29(1):32-58. doi: 10.1002/(sici)1097-0134(199709)29:1<32::aid-prot3>3.0.co;2-h. Proteins. 1997. PMID: 9294865

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