Fu Y - Search Results

1

DeepDetect: Deep Learning of Peptide Detectability Enhanced by Peptide Digestibility and Its Application to DIA Library Reduction.

Yang J, Cheng Z, Gong F, Fu Y. Yang J, et al. Among authors: fu y. Anal Chem. 2023 Apr 18;95(15):6235-6243. doi: 10.1021/acs.analchem.2c03662. Epub 2023 Mar 12. Anal Chem. 2023. PMID: 36908083

2

pQuant improves quantitation by keeping out interfering signals and evaluating the accuracy of calculated ratios.

Liu C, Song CQ, Yuan ZF, Fu Y, Chi H, Wang LH, Fan SB, Zhang K, Zeng WF, He SM, Dong MQ, Sun RX. Liu C, et al. Among authors: fu y. Anal Chem. 2014 Jun 3;86(11):5286-94. doi: 10.1021/ac404246w. Epub 2014 May 13. Anal Chem. 2014. PMID: 24799117

3

Quality control of single amino acid variations detected by tandem mass spectrometry.

Yi X, Wang B, An Z, Gong F, Li J, Fu Y. Yi X, et al. Among authors: fu y. J Proteomics. 2018 Sep 15;187:144-151. doi: 10.1016/j.jprot.2018.07.004. Epub 2018 Jul 23. J Proteomics. 2018. PMID: 30012419

4

PTMiner: Localization and Quality Control of Protein Modifications Detected in an Open Search and Its Application to Comprehensive Post-translational Modification Characterization in Human Proteome.

An Z, Zhai L, Ying W, Qian X, Gong F, Tan M, Fu Y. An Z, et al. Among authors: fu y. Mol Cell Proteomics. 2019 Feb;18(2):391-405. doi: 10.1074/mcp.RA118.000812. Epub 2018 Nov 12. Mol Cell Proteomics. 2019. PMID: 30420486 Free PMC article.

5

LFAQ: Toward Unbiased Label-Free Absolute Protein Quantification by Predicting Peptide Quantitative Factors.

Chang C, Gao Z, Ying W, Fu Y, Zhao Y, Wu S, Li M, Wang G, Qian X, Zhu Y, He F. Chang C, et al. Among authors: fu y. Anal Chem. 2019 Jan 15;91(2):1335-1343. doi: 10.1021/acs.analchem.8b03267. Epub 2018 Dec 21. Anal Chem. 2019. PMID: 30525483

6

AP3: An Advanced Proteotypic Peptide Predictor for Targeted Proteomics by Incorporating Peptide Digestibility.

Gao Z, Chang C, Yang J, Zhu Y, Fu Y. Gao Z, et al. Among authors: fu y. Anal Chem. 2019 Jul 2;91(13):8705-8711. doi: 10.1021/acs.analchem.9b02520. Epub 2019 Jun 20. Anal Chem. 2019. PMID: 31247716

7

Transfer posterior error probability estimation for peptide identification.

Yi X, Gong F, Fu Y. Yi X, et al. Among authors: fu y. BMC Bioinformatics. 2020 May 4;21(1):173. doi: 10.1186/s12859-020-3485-y. BMC Bioinformatics. 2020. PMID: 32366221 Free PMC article.

8

DeepDigest: Prediction of Protein Proteolytic Digestion with Deep Learning.

Yang J, Gao Z, Ren X, Sheng J, Xu P, Chang C, Fu Y. Yang J, et al. Among authors: fu y. Anal Chem. 2021 Apr 20;93(15):6094-6103. doi: 10.1021/acs.analchem.0c04704. Epub 2021 Apr 7. Anal Chem. 2021. PMID: 33826301

9

Null-free False Discovery Rate Control Using Decoy Permutations.

He K, Li MJ, Fu Y, Gong FZ, Sun XM. He K, et al. Among authors: fu y. Acta Math Appl Sin. 2022;38(2):235-253. doi: 10.1007/s10255-022-1077-5. Epub 2022 Apr 9. Acta Math Appl Sin. 2022. PMID: 35431377 Free PMC article.

10

A protocol of using PTMiner for quality control and localization of protein modifications identified by open or closed search of tandem mass spectra.

Cheng Z, Song G, Fu Y. Cheng Z, et al. Among authors: fu y. Biophys Rep. 2022 Dec 31;8(5-6):269-281. doi: 10.52601/bpr.2022.220024. Biophys Rep. 2022. PMID: 37287873 Free PMC article.

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