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Spatial epigenome-transcriptome co-profiling of mammalian tissues.
Zhang D, Deng Y, Kukanja P, Agirre E, Bartosovic M, Dong M, Ma C, Ma S, Su G, Bao S, Liu Y, Xiao Y, Rosoklija GB, Dwork AJ, Mann JJ, Leong KW, Boldrini M, Wang L, Haeussler M, Raphael BJ, Kluger Y, Castelo-Branco G, Fan R. Zhang D, et al. Among authors: deng y. Nature. 2023 Apr;616(7955):113-122. doi: 10.1038/s41586-023-05795-1. Epub 2023 Mar 15. Nature. 2023. PMID: 36922587 Free PMC article.
Spatial multi-omics sequencing for fixed tissue via DBiT-seq.
Su G, Qin X, Enninful A, Bai Z, Deng Y, Liu Y, Fan R. Su G, et al. Among authors: deng y. STAR Protoc. 2021 May 11;2(2):100532. doi: 10.1016/j.xpro.2021.100532. eCollection 2021 Jun 18. STAR Protoc. 2021. PMID: 34027489 Free PMC article.
Spatial-CITE-seq: spatially resolved high-plex protein and whole transcriptome co-mapping.
Liu Y, DiStasio M, Su G, Asashima H, Enninful A, Qin X, Deng Y, Bordignon P, Cassano M, Tomayko M, Xu M, Halene S, Craft JE, Hafler D, Fan R. Liu Y, et al. Among authors: deng y. Res Sq [Preprint]. 2022 Mar 30:rs.3.rs-1499315. doi: 10.21203/rs.3.rs-1499315/v1. Res Sq. 2022. Update in: Nat Biotechnol. 2023 Oct;41(10):1405-1409. doi: 10.1038/s41587-023-01676-0 PMID: 35378748 Free PMC article. Updated. Preprint.
Single-cell antigen-specific landscape of CAR T infusion product identifies determinants of CD19-positive relapse in patients with ALL.
Bai Z, Woodhouse S, Zhao Z, Arya R, Govek K, Kim D, Lundh S, Baysoy A, Sun H, Deng Y, Xiao Y, Barrett DM, Myers RM, Grupp SA, June CH, Fan R, Camara PG, Melenhorst JJ. Bai Z, et al. Among authors: deng y. Sci Adv. 2022 Jun 10;8(23):eabj2820. doi: 10.1126/sciadv.abj2820. Epub 2022 Jun 8. Sci Adv. 2022. PMID: 35675405 Free PMC article.
Cross-platform analysis reveals cellular and molecular landscape of glioblastoma invasion.
Chen AT, Xiao Y, Tang X, Baqri M, Gao X, Reschke M, Sheu WC, Long G, Zhou Y, Deng G, Zhang S, Deng Y, Bai Z, Kim D, Huttner A, Kunes R, Günel M, Moliterno J, Saltzman WM, Fan R, Zhou J. Chen AT, et al. Among authors: deng y, deng g. Neuro Oncol. 2023 Mar 14;25(3):482-494. doi: 10.1093/neuonc/noac186. Neuro Oncol. 2023. PMID: 35901838 Free PMC article.
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