Xie J - Search Results

1

Prioritizing prognostic-associated subpopulations and individualized recurrence risk signatures from single-cell transcriptomes of colorectal cancer.

Tong M, Lin Y, Yang W, Song J, Zhang Z, Xie J, Tian J, Luo S, Liang C, Huang J, Yu R. Tong M, et al. Among authors: xie j. Brief Bioinform. 2023 May 19;24(3):bbad078. doi: 10.1093/bib/bbad078. Brief Bioinform. 2023. PMID: 36946415

2

Tracing unknown tumor origins with a biological-pathway-based transformer model.

Xie J, Chen Y, Luo S, Yang W, Lin Y, Wang L, Ding X, Tong M, Yu R. Xie J, et al. Cell Rep Methods. 2024 Jun 17;4(6):100797. doi: 10.1016/j.crmeth.2024.100797. Cell Rep Methods. 2024. PMID: 38889685 Free PMC article.

3

PathMethy: an interpretable AI framework for cancer origin tracing based on DNA methylation.

Xie J, Song Y, Zheng H, Luo S, Chen Y, Zhang C, Yu R, Tong M. Xie J, et al. Brief Bioinform. 2024 Sep 23;25(6):bbae497. doi: 10.1093/bib/bbae497. Brief Bioinform. 2024. PMID: 39391931 Free PMC article.

4

Identification of population-level differentially expressed genes in one-phenotype data.

Xie J, Xu Y, Chen H, Chi M, He J, Li M, Liu H, Xia J, Guan Q, Guo Z, Yan H. Xie J, et al. Bioinformatics. 2020 Aug 1;36(15):4283-4290. doi: 10.1093/bioinformatics/btaa523. Bioinformatics. 2020. PMID: 32428201 Free PMC article.

5

A qualitative transcriptional signature for the early diagnosis of colorectal cancer.

Guan Q, Zeng Q, Yan H, Xie J, Cheng J, Ao L, He J, Zhao W, Chen K, Guo Y, Guan G, Guo Z. Guan Q, et al. Among authors: xie j. Cancer Sci. 2019 Oct;110(10):3225-3234. doi: 10.1111/cas.14137. Epub 2019 Sep 3. Cancer Sci. 2019. PMID: 31335996 Free PMC article.

6

StemSC: a cross-dataset human stemness index for single-cell samples.

Zheng H, Xie J, Song K, Yang J, Xiao H, Zhang J, Li K, Yuan R, Zhao Y, Gu Y, Zhao W. Zheng H, et al. Among authors: xie j. Stem Cell Res Ther. 2022 Mar 21;13(1):115. doi: 10.1186/s13287-022-02803-5. Stem Cell Res Ther. 2022. PMID: 35313979 Free PMC article.

7

A Qualitative Transcriptional Signature for the Risk Assessment of Precancerous Colorectal Lesions.

Guan Q, Zeng Q, Jiang W, Xie J, Cheng J, Yan H, He J, Xu Y, Guan G, Guo Z, Ao L. Guan Q, et al. Among authors: xie j. Front Genet. 2021 Jan 15;11:573787. doi: 10.3389/fgene.2020.573787. eCollection 2020. Front Genet. 2021. PMID: 33519891 Free PMC article.

8

Qualitative diagnostic signature for pancreatic ductal adenocarcinoma based on the within-sample relative expression orderings.

Xia J, Zhang H, Guan Q, Wang S, Li Y, Xie J, Li M, Huang H, Yan H, Chen T. Xia J, et al. Among authors: xie j. J Gastroenterol Hepatol. 2021 Jun;36(6):1714-1720. doi: 10.1111/jgh.15326. Epub 2020 Nov 27. J Gastroenterol Hepatol. 2021. PMID: 33150986

9

Identification of Common and Subtype-Specific Mutated Sub-Pathways for a Cancer.

Yan H, Deng X, Chen H, Cheng J, He J, Guan Q, Li M, Xie J, Xia J, Gu Y, Guo Z. Yan H, et al. Among authors: xie j. Front Genet. 2019 Nov 28;10:1228. doi: 10.3389/fgene.2019.01228. eCollection 2019. Front Genet. 2019. PMID: 31850075 Free PMC article.

10

Identification of the origin of brain metastases based on the relative methylation orderings of CpG sites.

Liu H, Chen J, Chen H, Xia J, Wang O, Xie J, Li M, Guo Z, Chen G, Yan H. Liu H, et al. Among authors: xie j. Epigenetics. 2021 Aug;16(8):908-916. doi: 10.1080/15592294.2020.1827720. Epub 2020 Oct 22. Epigenetics. 2021. PMID: 32965167 Free PMC article.

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