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Page 1
Proteomic Characterization of Acute Kidney Injury in Patients Hospitalized with SARS-CoV2 Infection.
Nadkami G, Paranjpe I, Jayaraman P, Su CY, Zhou S, Chen S, Valle DD, Thompson R, Kenigsberg E, Zhao S, Jaladanki S, Chaudhary K, Ascolillo S, Vaid A, Gonzalez-Kozlova E, Kumar A, Paranjpe M, O'Hagan R, Kamat S, Gulamali F, Kauffman J, Xie H, Harris J, Patel M, Argueta K, Batchelor C, Nie K, Dellepiane S, Scott L, Levin M, He J, Suárez-Fariñas M, Coca S, Chan L, Azeloglu E, Schadt E, Beckmann N, Gnjatic S, Merad M, Kim-Schulze S, Richards JB, Glicksberg B, Charney A. Nadkami G, et al. Among authors: kauffman j. Res Sq [Preprint]. 2023 Mar 16:rs.3.rs-2379226. doi: 10.21203/rs.3.rs-2379226/v1. Res Sq. 2023. Update in: Commun Med (Lond). 2023 Jun 12;3(1):81. doi: 10.1038/s43856-023-00307-8 PMID: 36993735 Free PMC article. Updated. Preprint.
Proteomic Characterization of Acute Kidney Injury in Patients Hospitalized with SARS-CoV2 Infection.
Paranjpe I, Jayaraman P, Su CY, Zhou S, Chen S, Thompson R, Del Valle DM, Kenigsberg E, Zhao S, Jaladanki S, Chaudhary K, Ascolillo S, Vaid A, Kumar A, Kozlova E, Paranjpe M, O'Hagan R, Kamat S, Gulamali FF, Kauffman J, Xie H, Harris J, Patel M, Argueta K, Batchelor C, Nie K, Dellepiane S, Scott L, Levin MA, He JC, Suarez-Farinas M, Coca SG, Chan L, Azeloglu EU, Schadt E, Beckmann N, Gnjatic S, Merad M, Kim-Schulze S, Richards B, Glicksberg BS, Charney AW, Nadkarni GN. Paranjpe I, et al. Among authors: kauffman j. medRxiv [Preprint]. 2022 Aug 29:2021.12.09.21267548. doi: 10.1101/2021.12.09.21267548. medRxiv. 2022. Update in: Commun Med (Lond). 2023 Jun 12;3(1):81. doi: 10.1038/s43856-023-00307-8 PMID: 36093350 Free PMC article. Updated. Preprint.
Peripheral Transcriptomics in Acute and Long-Term Kidney Dysfunction in SARS-CoV2 Infection.
Jayaraman P, Rajagopal M, Paranjpe I, Liharska L, Suarez-Farinas M, Thompson R, Del Valle DM, Beckmann N, Oh W, Gulamali FF, Kauffman J, Gonzalez-Kozlova E, Dellepiane S, Vasquez-Rios G, Vaid A, Jiang J, Chen A, Sakhuja A, Chen S, Kenigsberg E, He JC, Coca SG, Chan L, Schadt E, Merad M, Kim-Schulze S, Gnjatic S, Tsalik E, Langley R, Charney AW, Nadkarni GN. Jayaraman P, et al. Among authors: kauffman j. medRxiv [Preprint]. 2023 Oct 27:2023.10.25.23297469. doi: 10.1101/2023.10.25.23297469. medRxiv. 2023. PMID: 37961671 Free PMC article. Preprint.
Spatial proteomic differences in chronic traumatic encephalopathy, Alzheimer's disease, and primary age-related tauopathy hippocampi.
Richardson TE, Orr ME, Orr TC, Rohde SK, Ehrenberg AJ, Thorn EL, Christie TD, Flores-Almazan V, Afzal R, De Sanctis C, Maldonado-Díaz C, Hiya S, Canbeldek L, Kulumani Mahadevan LS, Slocum C, Samanamud J, Clare K, Scibetta N, Yokoda RT, Koenigsberg D, Marx GA, Kauffman J, Goldstein A, Selmanovic E, Drummond E, Wisniewski T, White CL 3rd, Goate AM, Crary JF, Farrell K, Alosco ML, Mez J, McKee AC, Stein TD, Bieniek KF, Kautz TF, Daoud EV, Walker JM. Richardson TE, et al. Among authors: kauffman j. Alzheimers Dement. 2024 Dec 31. doi: 10.1002/alz.14487. Online ahead of print. Alzheimers Dement. 2024. PMID: 39737785
Extracting International Classification of Diseases Codes from Clinical Documentation using Large Language Models.
Simmons A, Takkavatakarn K, McDougal M, Dilcher B, Pincavitch J, Meadows L, Kauffman J, Klang E, Wig R, Smith GS, Soroush A, Freeman R, Apakama D, Charney A, Kohli-Seth R, Nadkarni G, Sakhuja A. Simmons A, et al. Among authors: kauffman j. Appl Clin Inform. 2024 Nov 28. doi: 10.1055/a-2491-3872. Online ahead of print. Appl Clin Inform. 2024. PMID: 39608761
Benchmarking Large Language Models for Extraction of International Classification of Diseases Codes from Clinical Documentation.
Simmons A, Takkavatakarn K, McDougal M, Dilcher B, Pincavitch J, Meadows L, Kauffman J, Klang E, Wig R, Smith G, Soroush A, Freeman R, Apakama DJ, Charney AW, Kohli-Seth R, Nadkarni GN, Sakhuja A. Simmons A, et al. Among authors: kauffman j. medRxiv [Preprint]. 2024 Nov 23:2024.04.29.24306573. doi: 10.1101/2024.04.29.24306573. medRxiv. 2024. Update in: Appl Clin Inform. 2024 Nov 28. doi: 10.1055/a-2491-3872 PMID: 39606395 Free PMC article. Updated. Preprint.
Mapping Plasmodium transitions and interactions in the Anopheles female.
Yan Y, Cheung E, Verzier LH, Appetecchia F, March S, Craven AR, Du E, Probst AS, Rinvee TA, de Vries LE, Kauffman J, Bhatia SN, Nelson E, Singh N, Peng D, Shaw WR, Catteruccia F. Yan Y, et al. Among authors: kauffman j. bioRxiv [Preprint]. 2024 Nov 13:2024.11.12.623125. doi: 10.1101/2024.11.12.623125. bioRxiv. 2024. PMID: 39605504 Free PMC article. Preprint.
Strong climate mitigation potential of rewetting oil palm plantations on tropical peatlands.
Novita N, Asyhari A, Ritonga RP, Gangga A, Anshari GZ, Jupesta J, Bowen JC, Lestari NS, Kauffman JB, Hoyt AM, Perryman CR, Albar I, Putra CAS, Adinugroho WC, Winarno B, Castro M, Yeo S, Budiarna T, Yuono E, Sianipar VC. Novita N, et al. Among authors: kauffman jb. Sci Total Environ. 2024 Nov 20;952:175829. doi: 10.1016/j.scitotenv.2024.175829. Epub 2024 Aug 26. Sci Total Environ. 2024. PMID: 39197784 Free article.
293 results