Zhang J - Search Results

1

DEEP ACTIVE LEARNING FOR CRYO-ELECTRON TOMOGRAPHY CLASSIFICATION.

Wang T, Li B, Zhang J, Zeng X, Uddin MR, Wu W, Xu M. Wang T, et al. Among authors: zhang j. Proc Int Conf Image Proc. 2022 Oct;2022:1611-1615. doi: 10.1109/icip46576.2022.9898002. Epub 2022 Oct 18. Proc Int Conf Image Proc. 2022. PMID: 37021115 Free PMC article.

2

AttPNet: Attention-Based Deep Neural Network for 3D Point Set Analysis.

Yang Y, Ma Y, Zhang J, Gao X, Xu M. Yang Y, et al. Among authors: zhang j. Sensors (Basel). 2020 Sep 23;20(19):5455. doi: 10.3390/s20195455. Sensors (Basel). 2020. PMID: 32977508 Free PMC article.

3

Few-shot learning for classification of novel macromolecular structures in cryo-electron tomograms.

Li R, Yu L, Zhou B, Zeng X, Wang Z, Yang X, Zhang J, Gao X, Jiang R, Xu M. Li R, et al. Among authors: zhang j. PLoS Comput Biol. 2020 Nov 11;16(11):e1008227. doi: 10.1371/journal.pcbi.1008227. eCollection 2020 Nov. PLoS Comput Biol. 2020. PMID: 33175839 Free PMC article.

4

InsuLock: A Weakly Supervised Learning Approach for Accurate Insulator Prediction, and Variant Impact Quantification.

Srinivasan SS, Gong Y, Xu S, Hwang A, Xu M, Girgenti MJ, Zhang J. Srinivasan SS, et al. Among authors: zhang j. Genes (Basel). 2022 Mar 30;13(4):621. doi: 10.3390/genes13040621. Genes (Basel). 2022. PMID: 35456427 Free PMC article.

5

Structure Detection in Three-Dimensional Cellular Cryoelectron Tomograms by Reconstructing Two-Dimensional Annotated Tilt Series.

Zeng X, Lin Z, Uddin MR, Zhou B, Cheng C, Zhang J, Freyberg Z, Xu M. Zeng X, et al. Among authors: zhang j. J Comput Biol. 2022 Aug;29(8):932-941. doi: 10.1089/cmb.2021.0606. Epub 2022 Jul 21. J Comput Biol. 2022. PMID: 35862434 Free PMC article.

6

Venus: An efficient virus infection detection and fusion site discovery method using single-cell and bulk RNA-seq data.

Lee CY, Chen Y, Duan Z, Xu M, Girgenti MJ, Xu K, Gerstein M, Zhang J. Lee CY, et al. Among authors: zhang j. PLoS Comput Biol. 2022 Oct 27;18(10):e1010636. doi: 10.1371/journal.pcbi.1010636. eCollection 2022 Oct. PLoS Comput Biol. 2022. PMID: 36301997 Free PMC article.

7

iHerd: an integrative hierarchical graph representation learning framework to quantify network changes and prioritize risk genes in disease.

Duan Z, Dai Y, Hwang A, Lee C, Xie K, Xiao C, Xu M, Girgenti MJ, Zhang J. Duan Z, et al. Among authors: zhang j. PLoS Comput Biol. 2023 Sep 11;19(9):e1011444. doi: 10.1371/journal.pcbi.1011444. eCollection 2023 Sep. PLoS Comput Biol. 2023. PMID: 37695793 Free PMC article.

8

Impeller: a path-based heterogeneous graph learning method for spatial transcriptomic data imputation.

Duan Z, Riffle D, Li R, Liu J, Min MR, Zhang J. Duan Z, et al. Among authors: zhang j. Bioinformatics. 2024 Jun 3;40(6):btae339. doi: 10.1093/bioinformatics/btae339. Bioinformatics. 2024. PMID: 38806165 Free PMC article.

9

scEpiLock: A Weakly Supervised Learning Framework for cis-Regulatory Element Localization and Variant Impact Quantification for Single-Cell Epigenetic Data.

Gong Y, Srinivasan SS, Zhang R, Kessenbrock K, Zhang J. Gong Y, et al. Among authors: zhang r, zhang j. Biomolecules. 2022 Jun 23;12(7):874. doi: 10.3390/biom12070874. Biomolecules. 2022. PMID: 35883430 Free PMC article.

10

DeepVelo: Single-cell transcriptomic deep velocity field learning with neural ordinary differential equations.

Chen Z, King WC, Hwang A, Gerstein M, Zhang J. Chen Z, et al. Among authors: zhang j. Sci Adv. 2022 Dec 2;8(48):eabq3745. doi: 10.1126/sciadv.abq3745. Epub 2022 Nov 30. Sci Adv. 2022. PMID: 36449617 Free PMC article.

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