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Page 1
Transcription-replication interactions reveal principles of bacterial genome regulation.
Pountain AW, Jiang P, Yao T, Homaee E, Guan Y, Podkowik M, Shopsin B, Torres VJ, Golding I, Yanai I. Pountain AW, et al. Among authors: shopsin b. Res Sq [Preprint]. 2023 Mar 31:rs.3.rs-2724389. doi: 10.21203/rs.3.rs-2724389/v1. Res Sq. 2023. Update in: Nature. 2024 Feb;626(7999):661-669. doi: 10.1038/s41586-023-06974-w PMID: 37034646 Free PMC article. Updated. Preprint.
Gut microbiome dysbiosis during COVID-19 is associated with increased risk for bacteremia and microbial translocation.
Venzon M, Bernard-Raichon L, Klein J, Axelrad JE, Zhang C, Hussey GA, Sullivan AP, Casanovas-Massana A, Noval MG, Valero-Jimenez AM, Gago J, Putzel G, Pironti A, Wilder E; Yale IMPACT Research Team; Thorpe LE, Littman DR, Dittmann M, Stapleford KA, Shopsin B, Torres VJ, Ko AI, Iwasaki A, Cadwell K, Schluter J. Venzon M, et al. Among authors: shopsin b. bioRxiv [Preprint]. 2022 Mar 2:2021.07.15.452246. doi: 10.1101/2021.07.15.452246. bioRxiv. 2022. Update in: Nat Commun. 2022 Nov 1;13(1):5926. doi: 10.1038/s41467-022-33395-6 PMID: 35262080 Free PMC article. Updated. Preprint.
Microbiota and metabolic adaptation shape Staphylococcus aureus virulence and antimicrobial resistance during intestinal colonization.
Zhou C, Pawline MB, Pironti A, Morales SM, Perault AI, Ulrich RJ, Podkowik M, Lejeune A, DuMont A, Stubbe FX, Korman A, Jones DR, Schluter J, Richardson AR, Fey PD, Drlica K, Cadwell K, Torres VJ, Shopsin B. Zhou C, et al. Among authors: shopsin b. bioRxiv [Preprint]. 2024 May 11:2024.05.11.593044. doi: 10.1101/2024.05.11.593044. bioRxiv. 2024. PMID: 38766195 Free PMC article. Preprint.
Prophage-encoded methyltransferase drives adaptation of community-acquired methicillin-resistant Staphylococcus aureus.
Ulrich RJ, Podkowik M, Tierce R, Irnov I, Putzel G, Samhadaneh N, Lacey KA, Boff D, Morales SM, Makita S, Karagounis TK, Zwack EE, Zhou C, Kim R, Drlica K, Pironti A, van Bakel H, Torres VJ, Shopsin B. Ulrich RJ, et al. Among authors: shopsin b. bioRxiv [Preprint]. 2024 Apr 17:2024.04.17.589803. doi: 10.1101/2024.04.17.589803. bioRxiv. 2024. PMID: 38659881 Free PMC article. Preprint.
ACE2-containing defensosomes serve as decoys to inhibit SARS-CoV-2 infection.
Ching KL, de Vries M, Gago J, Dancel-Manning K, Sall J, Rice WJ, Barnett C, Liang FX, Thorpe LE, Shopsin B, Segal LN, Dittmann M, Torres VJ, Cadwell K. Ching KL, et al. Among authors: shopsin b. bioRxiv [Preprint]. 2021 Dec 23:2021.12.17.473223. doi: 10.1101/2021.12.17.473223. bioRxiv. 2021. Update in: PLoS Biol. 2022 Sep 13;20(9):e3001754. doi: 10.1371/journal.pbio.3001754 PMID: 34981050 Free PMC article. Updated. Preprint.
Microbial signatures in the lower airways of mechanically ventilated COVID19 patients associated with poor clinical outcome.
Sulaiman I, Chung M, Angel L, Koralov S, Wu B, Yeung S, Krolikowski K, Li Y, Duerr R, Schluger R, Thannickal S, Koide A, Rafeq S, Barnett C, Postelnicu R, Wang C, Banakis S, Perez-Perez L, Jour G, Shen G, Meyn P, Carpenito J, Liu X, Ji K, Collazo D, Labarbiera A, Amoroso N, Brosnahan S, Mukherjee V, Kaufman D, Bakker J, Lubinsky A, Pradhan D, Sterman D, Heguy A, Uyeki T, Clemente J, de Wit E, Schmidt AM, Shopsin B, Desvignes L, Wang C, Li H, Zhang B, Forst C, Koide S, Stapleford K, Khanna K, Ghedin E, Weiden M, Segal L. Sulaiman I, et al. Among authors: shopsin b. Res Sq [Preprint]. 2021 Mar 29:rs.3.rs-266050. doi: 10.21203/rs.3.rs-266050/v1. Res Sq. 2021. Update in: Nat Microbiol. 2021 Oct;6(10):1245-1258. doi: 10.1038/s41564-021-00961-5 PMID: 33791687 Free PMC article. Updated. Preprint.
Collagen binding adhesin restricts Staphylococcus aureus skin infection.
Bhattacharya M, Spencer BL, Kwiecinski JM, Podkowik M, Putzel G, Pironti A, Shopsin B, Doran KS, Horswill AR. Bhattacharya M, et al. Among authors: shopsin b. bioRxiv [Preprint]. 2024 Nov 2:2024.11.01.621145. doi: 10.1101/2024.11.01.621145. bioRxiv. 2024. PMID: 39554114 Free PMC article. Preprint.
SARS-CoV-2 infection predisposes patients to coinfection with Staphylococcus aureus.
Lubkin A, Bernard-Raichon L, DuMont AL, Valero Jimenez AM, Putzel GG, Gago J, Zwack EE, Olusanya O, Boguslawski KM, Dallari S, Dyzenhaus S, Herrmann C, Ilmain JK, Isom GL, Pawline M, Perault AI, Perelman S, Sause WE, Shahi I, St John A, Tierce R, Zheng X, Zhou C, Noval MG, O'Keeffe A, Podkowik M, Gonzales S, Inglima K, Desvignes L, Hochman SE, Stapleford KA, Thorpe LE, Pironti A, Shopsin B, Cadwell K, Dittmann M, Torres VJ. Lubkin A, et al. Among authors: shopsin b. mBio. 2024 Aug 14;15(8):e0166724. doi: 10.1128/mbio.01667-24. Epub 2024 Jul 22. mBio. 2024. PMID: 39037272 Free PMC article.
SARS-CoV-2 Viral Load in the Nasopharynx at Time of First Infection Among Unvaccinated Individuals: A Secondary Cross-Protocol Analysis of 4 Randomized Trials.
Fisher LH, Kee JJ, Liu A, Espinosa CM, Randhawa AK, Ludwig J, Magaret CA, Robinson ST, Gilbert PB, Hyrien O, Kublin JG, Rouphael N, Falsey AR, Sobieszczyk ME, El Sahly HM, Grinsztejn B, Gray GE, Kotloff KL, Gay CL, Leav B, Hirsch I, Struyf F, Dunkle LM, Neuzil KM, Corey L, Huang Y, Goepfert PA, Walsh SR, Baden LR, Janes H; COVID-19 Prevention Network (CoVPN). Fisher LH, et al. JAMA Netw Open. 2024 May 1;7(5):e2412835. doi: 10.1001/jamanetworkopen.2024.12835. JAMA Netw Open. 2024. PMID: 38780941 Free PMC article.
Quorum-sensing agr system of Staphylococcus aureus primes gene expression for protection from lethal oxidative stress.
Podkowik M, Perault AI, Putzel G, Pountain A, Kim J, DuMont AL, Zwack EE, Ulrich RJ, Karagounis TK, Zhou C, Haag AF, Shenderovich J, Wasserman GA, Kwon J, Chen J, Richardson AR, Weiser JN, Nowosad CR, Lun DS, Parker D, Pironti A, Zhao X, Drlica K, Yanai I, Torres VJ, Shopsin B. Podkowik M, et al. Among authors: shopsin b. Elife. 2024 Apr 30;12:RP89098. doi: 10.7554/eLife.89098. Elife. 2024. PMID: 38687677 Free PMC article.
164 results