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Genetics and Environment Distinctively Shape the Human Immune Cell Epigenome.
Wang W, Hariharan M, Ding W, Bartlett A, Barragan C, Castanon R, Rothenberg V, Song H, Nery J, Aldridge A, Altshul J, Kenworthy M, Liu H, Tian W, Zhou J, Zeng Q, Chen H, Wei B, Gündüz IB, Norell T, Broderick TJ, McClain MT, Satterwhite LL, Burke TW, Petzold EA, Shen X, Woods CW, Fowler VG, Ruffin F, Panuwet P, Barr DB, Beare JL, Smith AK, Spurbeck RR, Vangeti S, Ramos I, Nudelman G, Sealfon SC, Castellino F, Walley AM, Evans T, Müller F, Greenleaf WJ, Ecker JR. Wang W, et al. Among authors: smith ak. bioRxiv [Preprint]. 2025 Jan 4:2023.06.29.546792. doi: 10.1101/2023.06.29.546792. bioRxiv. 2025. PMID: 37425926 Free PMC article. Preprint.
Integrated epigenomic exposure signature discovery.
Schuetter J, Minard-Smith A, Hill B, Beare JL, Vornholt A, Burke TW, Murugan V, Smith AK, Chandrasekaran T, Shamma HJ, Kahaian SC, Fillinger KL, Amper MAS, Cheng WS, Ge Y, George MC, Guevara K, Lovette-Okwara N, Mahajan A, Marjanovic N, Mendelev N, Fowler VG, McClain MT, Miller CM, Mofsowitz S, Nair VD, Nudelman G, Evans TG, Castellino F, Ramos I, Rirak S, Ruf-Zamojski F, Seenarine N, Soares-Shanoski A, Vangeti S, Vasoya M, Yu X, Zaslavsky E, Ndhlovu LC, Corley MJ, Bowler S, Deeks SG, Letizia AG, Sealfon SC, Woods CW, Spurbeck RR. Schuetter J, et al. Among authors: smith ak. Epigenomics. 2024;16(14):1013-1029. doi: 10.1080/17501911.2024.2375187. Epub 2024 Sep 3. Epigenomics. 2024. PMID: 39225561 Free PMC article.
General Kernel Machine Methods for Multi-Omics Integration and Genome-Wide Association Testing With Related Individuals.
Little A, Zhao N, Mikhaylova A, Zhang A, Ling W, Thibord F, Johnson AD, Raffield LM, Curran JE, Blangero J, O'Connell JR, Xu H, Rotter JI, Rich SS, Rice KM, Chen MH, Reiner A, Kooperberg C, Vu T, Hou L, Fornage M, Loos RJF, Kenny E, Mathias R, Becker L, Smith AV, Boerwinkle E, Yu B, Thornton T, Wu MC. Little A, et al. Among authors: smith av. Genet Epidemiol. 2025 Jan;49(1):e22610. doi: 10.1002/gepi.22610. Genet Epidemiol. 2025. PMID: 39812506
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