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BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets.
Manubens-Gil L, Zhou Z, Chen H, Ramanathan A, Liu X, Liu Y, Bria A, Gillette T, Ruan Z, Yang J, Radojević M, Zhao T, Cheng L, Qu L, Liu S, Bouchard KE, Gu L, Cai W, Ji S, Roysam B, Wang CW, Yu H, Sironi A, Iascone DM, Zhou J, Bas E, Conde-Sousa E, Aguiar P, Li X, Li Y, Nanda S, Wang Y, Muresan L, Fua P, Ye B, He HY, Staiger JF, Peter M, Cox DN, Simonneau M, Oberlaender M, Jefferis G, Ito K, Gonzalez-Bellido P, Kim J, Rubel E, Cline HT, Zeng H, Nern A, Chiang AS, Yao J, Roskams J, Livesey R, Stevens J, Liu T, Dang C, Guo Y, Zhong N, Tourassi G, Hill S, Hawrylycz M, Koch C, Meijering E, Ascoli GA, Peng H. Manubens-Gil L, et al. Among authors: bouchard ke. Nat Methods. 2023 Jun;20(6):824-835. doi: 10.1038/s41592-023-01848-5. Epub 2023 Apr 17. Nat Methods. 2023. PMID: 37069271
Author Correction: BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets.
Manubens-Gil L, Zhou Z, Chen H, Ramanathan A, Liu X, Liu Y, Bria A, Gillette T, Ruan Z, Yang J, Radojević M, Zhao T, Cheng L, Qu L, Liu S, Bouchard KE, Gu L, Cai W, Ji S, Roysam B, Wang CW, Yu H, Sironi A, Iascone DM, Zhou J, Bas E, Conde-Sousa E, Aguiar P, Li X, Li Y, Nanda S, Wang Y, Muresan L, Fua P, Ye B, He HY, Staiger JF, Peter M, Cox DN, Simonneau M, Oberlaender M, Jefferis G, Ito K, Gonzalez-Bellido P, Kim J, Rubel E, Cline HT, Zeng H, Nern A, Chiang AS, Yao J, Roskams J, Livesey R, Stevens J, Liu T, Dang C, Guo Y, Zhong N, Tourassi G, Hill S, Hawrylycz M, Koch C, Meijering E, Ascoli GA, Peng H. Manubens-Gil L, et al. Among authors: bouchard ke. Nat Methods. 2024 Oct;21(10):1959. doi: 10.1038/s41592-024-02395-3. Nat Methods. 2024. PMID: 39090383 No abstract available.
FAIR for AI: An interdisciplinary and international community building perspective.
Huerta EA, Blaiszik B, Brinson LC, Bouchard KE, Diaz D, Doglioni C, Duarte JM, Emani M, Foster I, Fox G, Harris P, Heinrich L, Jha S, Katz DS, Kindratenko V, Kirkpatrick CR, Lassila-Perini K, Madduri RK, Neubauer MS, Psomopoulos FE, Roy A, Rübel O, Zhao Z, Zhu R. Huerta EA, et al. Among authors: bouchard ke. Sci Data. 2023 Jul 26;10(1):487. doi: 10.1038/s41597-023-02298-6. Sci Data. 2023. PMID: 37495591 Free PMC article.
Perspectives for self-driving labs in synthetic biology.
Martin HG, Radivojevic T, Zucker J, Bouchard K, Sustarich J, Peisert S, Arnold D, Hillson N, Babnigg G, Marti JM, Mungall CJ, Beckham GT, Waldburger L, Carothers J, Sundaram S, Agarwal D, Simmons BA, Backman T, Banerjee D, Tanjore D, Ramakrishnan L, Singh A. Martin HG, et al. Curr Opin Biotechnol. 2023 Feb;79:102881. doi: 10.1016/j.copbio.2022.102881. Epub 2023 Jan 3. Curr Opin Biotechnol. 2023. PMID: 36603501 Free article. Review.
DL-TODA: A Deep Learning Tool for Omics Data Analysis.
Cres CM, Tritt A, Bouchard KE, Zhang Y. Cres CM, et al. Among authors: bouchard ke. Biomolecules. 2023 Mar 24;13(4):585. doi: 10.3390/biom13040585. Biomolecules. 2023. PMID: 37189333 Free PMC article.
38 results