Liu ZP - Search Results

1

GeoBind: segmentation of nucleic acid binding interface on protein surface with geometric deep learning.

Li P, Liu ZP. Li P, et al. Among authors: liu zp. Nucleic Acids Res. 2023 Jun 9;51(10):e60. doi: 10.1093/nar/gkad288. Nucleic Acids Res. 2023. PMID: 37070217 Free PMC article.

2

Predicting lncRNA-Protein Interactions by Heterogenous Network Embedding.

Zhao G, Li P, Qiao X, Han X, Liu ZP. Zhao G, et al. Among authors: liu zp. Front Genet. 2022 Feb 4;12:814073. doi: 10.3389/fgene.2021.814073. eCollection 2021. Front Genet. 2022. PMID: 35186016 Free PMC article.

3

A new framework for host-pathogen interaction research.

Yu H, Li L, Huffman A, Beverley J, Hur J, Merrell E, Huang HH, Wang Y, Liu Y, Ong E, Cheng L, Zeng T, Zhang J, Li P, Liu Z, Wang Z, Zhang X, Ye X, Handelman SK, Sexton J, Eaton K, Higgins G, Omenn GS, Athey B, Smith B, Chen L, He Y. Yu H, et al. Front Immunol. 2022 Dec 15;13:1066733. doi: 10.3389/fimmu.2022.1066733. eCollection 2022. Front Immunol. 2022. PMID: 36591248 Free PMC article.

4

MuToN Quantifies Binding Affinity Changes upon Protein Mutations by Geometric Deep Learning.

Li P, Liu ZP. Li P, et al. Among authors: liu zp. Adv Sci (Weinh). 2024 Sep;11(35):e2402918. doi: 10.1002/advs.202402918. Epub 2024 Jul 12. Adv Sci (Weinh). 2024. PMID: 38995072 Free PMC article.

5

stMMR: accurate and robust spatial domain identification from spatially resolved transcriptomics with multimodal feature representation.

Zhang D, Yu N, Yuan Z, Li W, Sun X, Zou Q, Li X, Liu Z, Zhang W, Gao R. Zhang D, et al. Gigascience. 2024 Jan 2;13:giae089. doi: 10.1093/gigascience/giae089. Gigascience. 2024. PMID: 39607984 Free PMC article.

6

Structure alignment-based classification of RNA-binding pockets reveals regional RNA recognition motifs on protein surfaces.

Liu ZP, Liu S, Chen R, Huang X, Wu LY. Liu ZP, et al. Among authors: liu s. BMC Bioinformatics. 2017 Jan 11;18(1):27. doi: 10.1186/s12859-016-1410-1. BMC Bioinformatics. 2017. PMID: 28077065 Free PMC article.

7

Identifying biomarkers for breast cancer by gene regulatory network rewiring.

Wang Y, Liu ZP. Wang Y, et al. Among authors: liu zp. BMC Bioinformatics. 2022 Jan 20;22(Suppl 12):308. doi: 10.1186/s12859-021-04225-1. BMC Bioinformatics. 2022. PMID: 35045805 Free PMC article.

8

Predicting Box-Office Markets with Machine Learning Methods.

Li D, Liu ZP. Li D, et al. Among authors: liu zp. Entropy (Basel). 2022 May 16;24(5):711. doi: 10.3390/e24050711. Entropy (Basel). 2022. PMID: 35626594 Free PMC article.

9

tensorGSEA: Detecting Differential Pathways in Type 2 Diabetes via Tensor-Based Data Reconstruction.

Qiao X, Zhang X, Chen W, Xu X, Chen YW, Liu ZP. Qiao X, et al. Among authors: liu zp. Interdiscip Sci. 2022 Jun;14(2):520-531. doi: 10.1007/s12539-022-00506-2. Epub 2022 Feb 23. Interdiscip Sci. 2022. PMID: 35195883

10

scGENA: A Single-Cell Gene Coexpression Network Analysis Framework for Clustering Cell Types and Revealing Biological Mechanisms.

Algabri YA, Li L, Liu ZP. Algabri YA, et al. Among authors: liu zp. Bioengineering (Basel). 2022 Jul 30;9(8):353. doi: 10.3390/bioengineering9080353. Bioengineering (Basel). 2022. PMID: 36004879 Free PMC article.

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