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Workflow enabling deepscale immunopeptidome, proteome, ubiquitylome, phosphoproteome, and acetylome analyses of sample-limited tissues.
Abelin JG, Bergstrom EJ, Rivera KD, Taylor HB, Klaeger S, Xu C, Verzani EK, Jackson White C, Woldemichael HB, Virshup M, Olive ME, Maynard M, Vartany SA, Allen JD, Phulphagar K, Harry Kane M, Rachimi S, Mani DR, Gillette MA, Satpathy S, Clauser KR, Udeshi ND, Carr SA. Abelin JG, et al. Among authors: verzani ek. Nat Commun. 2023 Apr 3;14(1):1851. doi: 10.1038/s41467-023-37547-0. Nat Commun. 2023. PMID: 37012232 Free PMC article.
Targeting the aminopeptidase ERAP enhances antitumor immunity by disrupting the NKG2A-HLA-E inhibitory checkpoint.
Tsao HW, Anderson S, Finn KJ, Perera JJ, Pass LF, Schneider EM, Jiang A, Fetterman R, Chuong CL, Kozuma K, Stickler MM, Creixell M, Klaeger S, Phulphagar KM, Rachimi S, Verzani EK, Olsson N, Dubrot J, Pech MF, Silkworth W, Lane-Reticker SK, Allen PM, Ibrahim K, Knudsen NH, Cheng AY, Long AH, Ebrahimi-Nik H, Kim SY, Du PP, Iracheta-Vellve A, Robitschek EJ, Suermondt JSMT, Davis TGR, Wolfe CH, Atluri T, Olander KE, Rush JS, Sundberg TB, McAllister FE, Abelin JG, Firestone A, Stokoe D, Carr SA, Harding FA, Yates KB, Manguso RT. Tsao HW, et al. Among authors: verzani ek. Immunity. 2024 Dec 10;57(12):2863-2878.e12. doi: 10.1016/j.immuni.2024.10.013. Epub 2024 Nov 18. Immunity. 2024. PMID: 39561763 Free article.
Pan-viral ORFs discovery using Massively Parallel Ribosome Profiling.
Weingarten-Gabbay S, Bauer MR, Stanton AC, Klaeger S, Verzani EK, López D, Clauser KR, Carr SA, Abelin JG, Rice CM, Sabeti PC. Weingarten-Gabbay S, et al. Among authors: verzani ek. bioRxiv [Preprint]. 2023 Sep 28:2023.09.26.559641. doi: 10.1101/2023.09.26.559641. bioRxiv. 2023. PMID: 37808651 Free PMC article. Preprint.
Sensitive, high-throughput HLA-I and HLA-II immunopeptidomics using parallel accumulation-serial fragmentation mass spectrometry.
Phulphagar KM, Ctortecka C, Vaca Jacome AS, Klaeger S, Verzani EK, Hernandez GM, Udeshi N, Clauser K, Abelin J, Carr SA. Phulphagar KM, et al. Among authors: verzani ek. bioRxiv [Preprint]. 2023 Mar 18:2023.03.10.532106. doi: 10.1101/2023.03.10.532106. bioRxiv. 2023. Update in: Mol Cell Proteomics. 2023 Jun;22(6):100563. doi: 10.1016/j.mcpro.2023.100563 PMID: 36993564 Free PMC article. Updated. Preprint.