Bush E - Search Results

1

Re-convolving the compositional landscape of primary and recurrent glioblastoma reveals prognostic and targetable tissue states.

Al-Dalahmah O, Argenziano MG, Kannan A, Mahajan A, Furnari J, Paryani F, Boyett D, Save A, Humala N, Khan F, Li J, Lu H, Sun Y, Tuddenham JF, Goldberg AR, Dovas A, Banu MA, Sudhakar T, Bush E, Lassman AB, McKhann GM, Gill BJA, Youngerman B, Sisti MB, Bruce JN, Sims PA, Menon V, Canoll P. Al-Dalahmah O, et al. Among authors: bush e. Nat Commun. 2023 May 4;14(1):2586. doi: 10.1038/s41467-023-38186-1. Nat Commun. 2023. PMID: 37142563 Free PMC article.

2

Human memory T cells with a naive phenotype accumulate with aging and respond to persistent viruses.

Pulko V, Davies JS, Martinez C, Lanteri MC, Busch MP, Diamond MS, Knox K, Bush EC, Sims PA, Sinari S, Billheimer D, Haddad EK, Murray KO, Wertheimer AM, Nikolich-Žugich J. Pulko V, et al. Nat Immunol. 2016 Aug;17(8):966-75. doi: 10.1038/ni.3483. Epub 2016 Jun 6. Nat Immunol. 2016. PMID: 27270402 Free PMC article.

3

PLATE-Seq for genome-wide regulatory network analysis of high-throughput screens.

Bush EC, Ray F, Alvarez MJ, Realubit R, Li H, Karan C, Califano A, Sims PA. Bush EC, et al. Nat Commun. 2017 Jul 24;8(1):105. doi: 10.1038/s41467-017-00136-z. Nat Commun. 2017. PMID: 28740083 Free PMC article.

4

Whole tumor RNA-sequencing and deconvolution reveal a clinically-prognostic PTEN/PI3K-regulated glioma transcriptional signature.

Pan Y, Bush EC, Toonen JA, Ma Y, Solga AC, Sims PA, Gutmann DH. Pan Y, et al. Oncotarget. 2017 Apr 18;8(32):52474-52487. doi: 10.18632/oncotarget.17193. eCollection 2017 Aug 8. Oncotarget. 2017. PMID: 28881745 Free PMC article.

5

Graph complexity analysis identifies an ETV5 tumor-specific network in human and murine low-grade glioma.

Pan Y, Duron C, Bush EC, Ma Y, Sims PA, Gutmann DH, Radunskaya A, Hardin J. Pan Y, et al. PLoS One. 2018 May 22;13(5):e0190001. doi: 10.1371/journal.pone.0190001. eCollection 2018. PLoS One. 2018. PMID: 29787563 Free PMC article.

6

Single-cell transcriptome analysis of lineage diversity in high-grade glioma.

Yuan J, Levitin HM, Frattini V, Bush EC, Boyett DM, Samanamud J, Ceccarelli M, Dovas A, Zanazzi G, Canoll P, Bruce JN, Lasorella A, Iavarone A, Sims PA. Yuan J, et al. Genome Med. 2018 Jul 24;10(1):57. doi: 10.1186/s13073-018-0567-9. Genome Med. 2018. PMID: 30041684 Free PMC article.

7

De novo gene signature identification from single-cell RNA-seq with hierarchical Poisson factorization.

Levitin HM, Yuan J, Cheng YL, Ruiz FJ, Bush EC, Bruce JN, Canoll P, Iavarone A, Lasorella A, Blei DM, Sims PA. Levitin HM, et al. Mol Syst Biol. 2019 Feb 22;15(2):e8557. doi: 10.15252/msb.20188557. Mol Syst Biol. 2019. PMID: 30796088 Free PMC article.

8

Generation and persistence of human tissue-resident memory T cells in lung transplantation.

Snyder ME, Finlayson MO, Connors TJ, Dogra P, Senda T, Bush E, Carpenter D, Marboe C, Benvenuto L, Shah L, Robbins H, Hook JL, Sykes M, D'Ovidio F, Bacchetta M, Sonett JR, Lederer DJ, Arcasoy S, Sims PA, Farber DL. Snyder ME, et al. Among authors: bush e. Sci Immunol. 2019 Mar 8;4(33):eaav5581. doi: 10.1126/sciimmunol.aav5581. Sci Immunol. 2019. PMID: 30850393 Free PMC article.

9

Single cell RNA-Seq reveals pre-cDCs fate determined by transcription factor combinatorial dose.

Ma W, Lee J, Backenroth D, Zhou YJ, Bush E, Sims P, Liu K, Shen Y. Ma W, et al. Among authors: bush e. BMC Mol Cell Biol. 2019 Jun 28;20(1):20. doi: 10.1186/s12860-019-0199-y. BMC Mol Cell Biol. 2019. PMID: 31253076 Free PMC article.

10

Single-cell transcriptomics of human T cells reveals tissue and activation signatures in health and disease.

Szabo PA, Levitin HM, Miron M, Snyder ME, Senda T, Yuan J, Cheng YL, Bush EC, Dogra P, Thapa P, Farber DL, Sims PA. Szabo PA, et al. Among authors: bush ec. Nat Commun. 2019 Oct 17;10(1):4706. doi: 10.1038/s41467-019-12464-3. Nat Commun. 2019. PMID: 31624246 Free PMC article.

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