Yu R - Search Results

1

SC-AIR-BERT: a pre-trained single-cell model for predicting the antigen-binding specificity of the adaptive immune receptor.

Zhao Y, Su X, Zhang W, Mai S, Xu Z, Qin C, Yu R, He B, Yao J. Zhao Y, et al. Among authors: yu r. Brief Bioinform. 2023 Jul 20;24(4):bbad191. doi: 10.1093/bib/bbad191. Brief Bioinform. 2023. PMID: 37204192

2

Snipe: highly sensitive pathogen detection from metagenomic sequencing data.

Huang L, Hong B, Yang W, Wang L, Yu R. Huang L, et al. Among authors: yu r. Brief Bioinform. 2021 Sep 2;22(5):bbab064. doi: 10.1093/bib/bbab064. Brief Bioinform. 2021. PMID: 33822895

3

Prioritizing prognostic-associated subpopulations and individualized recurrence risk signatures from single-cell transcriptomes of colorectal cancer.

Tong M, Lin Y, Yang W, Song J, Zhang Z, Xie J, Tian J, Luo S, Liang C, Huang J, Yu R. Tong M, et al. Among authors: yu r. Brief Bioinform. 2023 May 19;24(3):bbad078. doi: 10.1093/bib/bbad078. Brief Bioinform. 2023. PMID: 36946415

4

PathMethy: an interpretable AI framework for cancer origin tracing based on DNA methylation.

Xie J, Song Y, Zheng H, Luo S, Chen Y, Zhang C, Yu R, Tong M. Xie J, et al. Among authors: yu r. Brief Bioinform. 2024 Sep 23;25(6):bbae497. doi: 10.1093/bib/bbae497. Brief Bioinform. 2024. PMID: 39391931 Free PMC article.

5

Comparison of high-throughput single-cell RNA sequencing data processing pipelines.

Gao M, Ling M, Tang X, Wang S, Xiao X, Qiao Y, Yang W, Yu R. Gao M, et al. Among authors: yu r. Brief Bioinform. 2021 May 20;22(3):bbaa116. doi: 10.1093/bib/bbaa116. Brief Bioinform. 2021. PMID: 34020539

6

Application of individualized differential expression analysis in human cancer proteome.

Liu Y, Lin Y, Yang W, Lin Y, Wu Y, Zhang Z, Lin N, Wang X, Tong M, Yu R. Liu Y, et al. Among authors: yu r. Brief Bioinform. 2022 May 13;23(3):bbac096. doi: 10.1093/bib/bbac096. Brief Bioinform. 2022. PMID: 35368072

7

Diamond: a multi-modal DIA mass spectrometry data processing pipeline.

Li C, Gao M, Yang W, Zhong C, Yu R. Li C, et al. Among authors: yu r. Bioinformatics. 2021 Apr 19;37(2):265-267. doi: 10.1093/bioinformatics/btaa1093. Bioinformatics. 2021. PMID: 33416868

8

Performance evaluation of lossy quality compression algorithms for RNA-seq data.

Yu R, Yang W, Wang S. Yu R, et al. BMC Bioinformatics. 2020 Jul 20;21(1):321. doi: 10.1186/s12859-020-03658-4. BMC Bioinformatics. 2020. PMID: 32689929 Free PMC article.

9

cgMSI: pathogen detection within species from nanopore metagenomic sequencing data.

Zhu X, Zhao L, Huang L, Yang W, Wang L, Yu R. Zhu X, et al. Among authors: yu r. BMC Bioinformatics. 2023 Oct 12;24(1):387. doi: 10.1186/s12859-023-05512-9. BMC Bioinformatics. 2023. PMID: 37821827 Free PMC article.

10

Using deep learning to predict anti-PD-1 response in melanoma and lung cancer patients from histopathology images.

Hu J, Cui C, Yang W, Huang L, Yu R, Liu S, Kong Y. Hu J, et al. Among authors: yu r. Transl Oncol. 2021 Jan;14(1):100921. doi: 10.1016/j.tranon.2020.100921. Epub 2020 Oct 28. Transl Oncol. 2021. PMID: 33129113 Free PMC article. Review.

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