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The scalable precision medicine open knowledge engine (SPOKE): a massive knowledge graph of biomedical information.
Morris JH, Soman K, Akbas RE, Zhou X, Smith B, Meng EC, Huang CC, Cerono G, Schenk G, Rizk-Jackson A, Harroud A, Sanders L, Costes SV, Bharat K, Chakraborty A, Pico AR, Mardirossian T, Keiser M, Tang A, Hardi J, Shi Y, Musen M, Israni S, Huang S, Rose PW, Nelson CA, Baranzini SE. Morris JH, et al. Among authors: baranzini se. Bioinformatics. 2023 Feb 3;39(2):btad080. doi: 10.1093/bioinformatics/btad080. Bioinformatics. 2023. PMID: 36759942 Free PMC article.
Biomedical knowledge graph-optimized prompt generation for large language models.
Soman K, Rose PW, Morris JH, Akbas RE, Smith B, Peetoom B, Villouta-Reyes C, Cerono G, Shi Y, Rizk-Jackson A, Israni S, Nelson CA, Huang S, Baranzini SE. Soman K, et al. Among authors: baranzini se. Bioinformatics. 2024 Sep 2;40(9):btae560. doi: 10.1093/bioinformatics/btae560. Bioinformatics. 2024. PMID: 39288310 Free PMC article.
A Predictive Autoantibody Signature in Multiple Sclerosis.
Zamecnik CR, Sowa GM, Abdelhak A, Dandekar R, Bair RD, Wade KJ, Bartley CM, Tubati A, Gomez R, Fouassier C, Gerungan C, Alexander J, Wapniarski AE, Loudermilk RP, Eggers EL, Zorn KC, Ananth K, Jabassini N, Mann SA, Ragan NR, Santaniello A, Henry RG, Baranzini SE, Zamvil SS, Bove RM, Guo CY, Gelfand JM, Cuneo R, von Büdingen HC, Oksenberg JR, Cree BA, Hollenbach JA, Green AJ, Hauser SL, Wallin MT, DeRisi JL, Wilson MR. Zamecnik CR, et al. Among authors: baranzini se. medRxiv [Preprint]. 2023 May 15:2023.05.01.23288943. doi: 10.1101/2023.05.01.23288943. medRxiv. 2023. Update in: Nat Med. 2024 May;30(5):1300-1308. doi: 10.1038/s41591-024-02938-3 PMID: 37205595 Free PMC article. Updated. Preprint.
A gene pathway analysis highlights the role of cellular adhesion molecules in multiple sclerosis susceptibility.
Damotte V, Guillot-Noel L, Patsopoulos NA, Madireddy L, El Behi M; International Multiple Sclerosis Genetics Consortium; Wellcome Trust Case Control Consortium 2; De Jager PL, Baranzini SE, Cournu-Rebeix I, Fontaine B. Damotte V, et al. Among authors: baranzini se. Genes Immun. 2014 Mar;15(2):126-32. doi: 10.1038/gene.2013.70. Epub 2014 Jan 16. Genes Immun. 2014. PMID: 24430173 Free article.
Artificial intelligence in food and nutrition evidence: The challenges and opportunities.
Bailey RL, MacFarlane AJ, Field MS, Tagkopoulos I, Baranzini SE, Edwards KM, Rose CJ, Schork NJ, Singhal A, Wallace BC, Fisher KP, Markakis K, Stover PJ. Bailey RL, et al. Among authors: baranzini se. PNAS Nexus. 2024 Oct 15;3(12):pgae461. doi: 10.1093/pnasnexus/pgae461. eCollection 2024 Dec. PNAS Nexus. 2024. PMID: 39677367 Free PMC article.
Restoring the Multiple Sclerosis Associated Imbalance of Gut Indole Metabolites Promotes Remyelination and Suppresses Neuroinflammation.
Jank L, Singh SS, Lee J, Dhukhwa A, Siavoshi F, Joshi D, Minney V, Gupta K, Ghimire S, Deme P, Schoeps VA, Soman K, Ladakis D, Smith M, Borkowski K, Newman J, Baranzini SE, Waubant EL, Fitzgerald KC, Mangalam A, Haughey N, Kornberg M, Chamling X, Calabresi PA, Bhargava P. Jank L, et al. Among authors: baranzini se. bioRxiv [Preprint]. 2024 Oct 28:2024.10.27.620437. doi: 10.1101/2024.10.27.620437. bioRxiv. 2024. PMID: 39554063 Free PMC article. Preprint.
Incomplete human reference genomes can drive false sex biases and expose patient-identifying information in metagenomic data.
Guccione C, Patel L, Tomofuji Y, McDonald D, Gonzalez A, Sepich-Poore GD, Sonehara K, Zakeri M, Chen Y, Dilmore AH, Damle N, Baranzini SE, Nakatsuji T, Gallo RL, Langmead B, Okada Y, Curtius K, Knight R. Guccione C, et al. Among authors: baranzini se. Res Sq [Preprint]. 2024 Oct 23:rs.3.rs-4721159. doi: 10.21203/rs.3.rs-4721159/v1. Res Sq. 2024. PMID: 39502785 Free PMC article. Preprint.
179 results