Yan J - Search Results

1

The TaxUMAP atlas: Efficient display of large clinical microbiome data reveals ecological competition in protection against bacteremia.

Schluter J, Djukovic A, Taylor BP, Yan J, Duan C, Hussey GA, Liao C, Sharma S, Fontana E, Amoretti LA, Wright RJ, Dai A, Peled JU, Taur Y, Perales MA, Siranosian BA, Bhatt AS, van den Brink MRM, Pamer EG, Xavier JB. Schluter J, et al. Among authors: yan j. Cell Host Microbe. 2023 Jul 12;31(7):1126-1139.e6. doi: 10.1016/j.chom.2023.05.027. Epub 2023 Jun 16. Cell Host Microbe. 2023. PMID: 37329880 Free PMC article.

2

Intestinal Bile Acids Induce a Morphotype Switch in Vancomycin-Resistant Enterococcus that Facilitates Intestinal Colonization.

McKenney PT, Yan J, Vaubourgeix J, Becattini S, Lampen N, Motzer A, Larson PJ, Dannaoui D, Fujisawa S, Xavier JB, Pamer EG. McKenney PT, et al. Among authors: yan j. Cell Host Microbe. 2019 May 8;25(5):695-705.e5. doi: 10.1016/j.chom.2019.03.008. Epub 2019 Apr 25. Cell Host Microbe. 2019. PMID: 31031170 Free PMC article.

3

A compilation of fecal microbiome shotgun metagenomics from hematopoietic cell transplantation patients.

Yan J, Liao C, Taylor BP, Fontana E, Amoretti LA, Wright RJ, Littmann ER, Dai A, Waters N, Peled JU, Taur Y, Perales MA, Siranosian BA, Bhatt AS, van den Brink MRM, Pamer EG, Schluter J, Xavier JB. Yan J, et al. Sci Data. 2022 May 18;9(1):219. doi: 10.1038/s41597-022-01302-9. Sci Data. 2022. PMID: 35585088 Free PMC article.

4

The Ultimate Guide to Bacterial Swarming: An Experimental Model to Study the Evolution of Cooperative Behavior.

Yan J, Monaco H, Xavier JB. Yan J, et al. Annu Rev Microbiol. 2019 Sep 8;73:293-312. doi: 10.1146/annurev-micro-020518-120033. Epub 2019 Jun 10. Annu Rev Microbiol. 2019. PMID: 31180806 Free PMC article. Review.

5

Evolution and regulation of microbial secondary metabolism.

Santamaria G, Liao C, Lindberg C, Chen Y, Wang Z, Rhee K, Pinto FR, Yan J, Xavier JB. Santamaria G, et al. Among authors: yan j. Elife. 2022 Nov 21;11:e76119. doi: 10.7554/eLife.76119. Elife. 2022. PMID: 36409069 Free PMC article.

6

Metabolism and the Evolution of Social Behavior.

Boyle KE, Monaco HT, Deforet M, Yan J, Wang Z, Rhee K, Xavier JB. Boyle KE, et al. Among authors: yan j. Mol Biol Evol. 2017 Sep 1;34(9):2367-2379. doi: 10.1093/molbev/msx174. Mol Biol Evol. 2017. PMID: 28595344 Free PMC article.

7

Systems-level analysis of NalD mutation, a recurrent driver of rapid drug resistance in acute Pseudomonas aeruginosa infection.

Yan J, Estanbouli H, Liao C, Kim W, Monk JM, Rahman R, Kamboj M, Palsson BO, Qiu W, Xavier JB. Yan J, et al. PLoS Comput Biol. 2019 Dec 20;15(12):e1007562. doi: 10.1371/journal.pcbi.1007562. eCollection 2019 Dec. PLoS Comput Biol. 2019. PMID: 31860667 Free PMC article.

8

The Vibrio cholerae type VI secretion system can modulate host intestinal mechanics to displace gut bacterial symbionts.

Logan SL, Thomas J, Yan J, Baker RP, Shields DS, Xavier JB, Hammer BK, Parthasarathy R. Logan SL, et al. Among authors: yan j. Proc Natl Acad Sci U S A. 2018 Apr 17;115(16):E3779-E3787. doi: 10.1073/pnas.1720133115. Epub 2018 Apr 2. Proc Natl Acad Sci U S A. 2018. PMID: 29610339 Free PMC article.

9

Bow-tie signaling in c-di-GMP: Machine learning in a simple biochemical network.

Yan J, Deforet M, Boyle KE, Rahman R, Liang R, Okegbe C, Dietrich LEP, Qiu W, Xavier JB. Yan J, et al. PLoS Comput Biol. 2017 Aug 2;13(8):e1005677. doi: 10.1371/journal.pcbi.1005677. eCollection 2017 Aug. PLoS Comput Biol. 2017. PMID: 28767643 Free PMC article.

10

Flexible PAN/P25 Multi-Porous Nanotubular Electrospun Membrane Constructed by a Facile Ethylene Glycol Solvothermal Induction with Excellent Photocatalytic Degradation and Sterilization Performance.

Miao Y, Zhang C, Sun Y, Wang C, Yan J, Deng S, Chi R. Miao Y, et al. Among authors: yan j. Polymers (Basel). 2024 Dec 13;16(24):3484. doi: 10.3390/polym16243484. Polymers (Basel). 2024. PMID: 39771336

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