Stanke M - Search Results

1

BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS and TSEBRA.

Gabriel L, Brůna T, Hoff KJ, Ebel M, Lomsadze A, Borodovsky M, Stanke M. Gabriel L, et al. Among authors: stanke m. bioRxiv [Preprint]. 2024 Feb 29:2023.06.10.544449. doi: 10.1101/2023.06.10.544449. bioRxiv. 2024. Update in: Genome Res. 2024 Jun 25;34(5):769-777. doi: 10.1101/gr.278090.123 PMID: 37398387 Free PMC article. Updated. Preprint.

2

House spider genome uncovers evolutionary shifts in the diversity and expression of black widow venom proteins associated with extreme toxicity.

Gendreau KL, Haney RA, Schwager EE, Wierschin T, Stanke M, Richards S, Garb JE. Gendreau KL, et al. Among authors: stanke m. BMC Genomics. 2017 Feb 16;18(1):178. doi: 10.1186/s12864-017-3551-7. BMC Genomics. 2017. PMID: 28209133 Free PMC article.

3

A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes.

Schultz AK, Zhang M, Leitner T, Kuiken C, Korber B, Morgenstern B, Stanke M. Schultz AK, et al. Among authors: stanke m. BMC Bioinformatics. 2006 May 22;7:265. doi: 10.1186/1471-2105-7-265. BMC Bioinformatics. 2006. PMID: 16716226 Free PMC article.

4

Gene prediction with a hidden Markov model and a new intron submodel.

Stanke M, Waack S. Stanke M, et al. Bioinformatics. 2003 Oct;19 Suppl 2:ii215-25. doi: 10.1093/bioinformatics/btg1080. Bioinformatics. 2003. PMID: 14534192

5

Design of a tobacco exon array with application to investigate the differential cadmium accumulation property in two tobacco varieties.

Martin F, Bovet L, Cordier A, Stanke M, Gunduz I, Peitsch MC, Ivanov NV. Martin F, et al. Among authors: stanke m. BMC Genomics. 2012 Nov 28;13:674. doi: 10.1186/1471-2164-13-674. BMC Genomics. 2012. PMID: 23190529 Free PMC article.

6

Using native and syntenically mapped cDNA alignments to improve de novo gene finding.

Stanke M, Diekhans M, Baertsch R, Haussler D. Stanke M, et al. Bioinformatics. 2008 Mar 1;24(5):637-44. doi: 10.1093/bioinformatics/btn013. Epub 2008 Jan 24. Bioinformatics. 2008. PMID: 18218656

7

Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources.

Stanke M, Schöffmann O, Morgenstern B, Waack S. Stanke M, et al. BMC Bioinformatics. 2006 Feb 9;7:62. doi: 10.1186/1471-2105-7-62. BMC Bioinformatics. 2006. PMID: 16469098 Free PMC article.

8

CRF-based models of protein surfaces improve protein-protein interaction site predictions.

Dong Z, Wang K, Dang TK, Gültas M, Welter M, Wierschin T, Stanke M, Waack S. Dong Z, et al. Among authors: stanke m. BMC Bioinformatics. 2014 Aug 13;15(1):277. doi: 10.1186/1471-2105-15-277. BMC Bioinformatics. 2014. PMID: 25124108 Free PMC article.

9

Application of YOLOv4 for Detection and Motion Monitoring of Red Foxes.

Schütz AK, Schöler V, Krause ET, Fischer M, Müller T, Freuling CM, Conraths FJ, Stanke M, Homeier-Bachmann T, Lentz HHK. Schütz AK, et al. Among authors: stanke m. Animals (Basel). 2021 Jun 9;11(6):1723. doi: 10.3390/ani11061723. Animals (Basel). 2021. PMID: 34207726 Free PMC article.

10

Large scale RNAi screen in Tribolium reveals novel target genes for pest control and the proteasome as prime target.

Ulrich J, Dao VA, Majumdar U, Schmitt-Engel C, Schwirz J, Schultheis D, Ströhlein N, Troelenberg N, Grossmann D, Richter T, Dönitz J, Gerischer L, Leboulle G, Vilcinskas A, Stanke M, Bucher G. Ulrich J, et al. Among authors: stanke m. BMC Genomics. 2015 Sep 3;16(1):674. doi: 10.1186/s12864-015-1880-y. BMC Genomics. 2015. PMID: 26334912 Free PMC article.

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