Lou S - Search Results

1

Constructing a full, multiple-layer interactome for SARS-CoV-2 in the context of lung disease: Linking the virus with human genes and microbes.

Lou S, Yang M, Li T, Zhao W, Cevasco H, Yang YT, Gerstein M. Lou S, et al. PLoS Comput Biol. 2023 Jul 6;19(7):e1011222. doi: 10.1371/journal.pcbi.1011222. eCollection 2023 Jul. PLoS Comput Biol. 2023. PMID: 37410793 Free PMC article.

2

MrTADFinder: A network modularity based approach to identify topologically associating domains in multiple resolutions.

Yan KK, Lou S, Gerstein M. Yan KK, et al. Among authors: lou s. PLoS Comput Biol. 2017 Jul 24;13(7):e1005647. doi: 10.1371/journal.pcbi.1005647. eCollection 2017 Jul. PLoS Comput Biol. 2017. PMID: 28742097 Free PMC article.

3

Approaches for integrating heterogeneous RNA-seq data reveal cross-talk between microbes and genes in asthmatic patients.

Spakowicz D, Lou S, Barron B, Gomez JL, Li T, Liu Q, Grant N, Yan X, Hoyd R, Weinstock G, Chupp GL, Gerstein M. Spakowicz D, et al. Among authors: lou s. Genome Biol. 2020 Jun 22;21(1):150. doi: 10.1186/s13059-020-02033-z. Genome Biol. 2020. PMID: 32571363 Free PMC article.

4

TopicNet: a framework for measuring transcriptional regulatory network change.

Lou S, Li T, Kong X, Zhang J, Liu J, Lee D, Gerstein M. Lou S, et al. Bioinformatics. 2020 Jul 1;36(Suppl_1):i474-i481. doi: 10.1093/bioinformatics/btaa403. Bioinformatics. 2020. PMID: 32657410 Free PMC article.

5

Latent-space embedding of expression data identifies gene signatures from sputum samples of asthmatic patients.

Lou S, Li T, Spakowicz D, Yan X, Chupp GL, Gerstein M. Lou S, et al. BMC Bioinformatics. 2020 Oct 15;21(1):457. doi: 10.1186/s12859-020-03785-y. BMC Bioinformatics. 2020. PMID: 33059594 Free PMC article.

6

Gene Tracer: a smart, interactive, voice-controlled Alexa skill For gene information retrieval and browsing, mutation annotation and network visualization.

Lou S, Li T, Liu J, Gerstein M. Lou S, et al. Bioinformatics. 2021 Sep 29;37(18):2998-3000. doi: 10.1093/bioinformatics/btab107. Bioinformatics. 2021. PMID: 33792640 Free PMC article.

7

Building a Hybrid Physical-Statistical Classifier for Predicting the Effect of Variants Related to Protein-Drug Interactions.

Wang B, Yan C, Lou S, Emani P, Li B, Xu M, Kong X, Meyerson W, Yang YT, Lee D, Gerstein M. Wang B, et al. Among authors: lou s. Structure. 2019 Sep 3;27(9):1469-1481.e3. doi: 10.1016/j.str.2019.06.001. Epub 2019 Jul 3. Structure. 2019. PMID: 31279629 Free article.

8

RADAR: annotation and prioritization of variants in the post-transcriptional regulome of RNA-binding proteins.

Zhang J, Liu J, Lee D, Feng JJ, Lochovsky L, Lou S, Rutenberg-Schoenberg M, Gerstein M. Zhang J, et al. Among authors: lou s. Genome Biol. 2020 Jul 30;21(1):151. doi: 10.1186/s13059-020-01979-4. Genome Biol. 2020. PMID: 32727537 Free PMC article.

9

GRAM: A GeneRAlized Model to predict the molecular effect of a non-coding variant in a cell-type specific manner.

Lou S, Cotter KA, Li T, Liang J, Mohsen H, Liu J, Zhang J, Cohen S, Xu J, Yu H, Rubin MA, Gerstein M. Lou S, et al. PLoS Genet. 2019 Aug 30;15(8):e1007860. doi: 10.1371/journal.pgen.1007860. eCollection 2019 Aug. PLoS Genet. 2019. PMID: 31469829 Free PMC article.

10

DiNeR: a Differential graphical model for analysis of co-regulation Network Rewiring.

Zhang J, Liu J, Lee D, Lou S, Chen Z, Gürsoy G, Gerstein M. Zhang J, et al. Among authors: lou s. BMC Bioinformatics. 2020 Jul 2;21(1):281. doi: 10.1186/s12859-020-03605-3. BMC Bioinformatics. 2020. PMID: 32615918 Free PMC article.

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