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Transposable element sequence fragments incorporated into coding and noncoding transcripts modulate the transcriptome of human pluripotent stem cells.
Babarinde IA, Ma G, Li Y, Deng B, Luo Z, Liu H, Abdul MM, Ward C, Chen M, Fu X, Shi L, Duttlinger M, He J, Sun L, Li W, Zhuang Q, Tong G, Frampton J, Cazier JB, Chen J, Jauch R, Esteban MA, Hutchins AP. Babarinde IA, et al. Among authors: shi l. Nucleic Acids Res. 2021 Sep 20;49(16):9132-9153. doi: 10.1093/nar/gkab710. Nucleic Acids Res. 2021. PMID: 34390351 Free PMC article.
The homeodomain of Oct4 is a dimeric binder of methylated CpG elements.
Tan DS, Cheung SL, Gao Y, Weinbuch M, Hu H, Shi L, Ti SC, Hutchins AP, Cojocaru V, Jauch R. Tan DS, et al. Among authors: shi l. Nucleic Acids Res. 2023 Feb 22;51(3):1120-1138. doi: 10.1093/nar/gkac1262. Nucleic Acids Res. 2023. PMID: 36631980 Free PMC article.
Single-cell RNA sequencing reveals immune cell dysfunction in the peripheral blood of patients with highly aggressive gastric cancer.
Ma R, Zhou X, Zhai X, Wang C, Hu R, Chen Y, Shi L, Fang X, Liao Y, Ma L, Jiang M, Wu J, Wang R, Chen J, Cao T, Du G, Zhao Y, Wu W, Chen H, Li S, Lian Q, Guo G, Xiao J, Hutchins AP, Yuan P. Ma R, et al. Among authors: shi l. Cell Prolif. 2024 May;57(5):e13591. doi: 10.1111/cpr.13591. Epub 2024 Feb 6. Cell Prolif. 2024. PMID: 38319150 Free PMC article.
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