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Protein target highlights in CASP15: Analysis of models by structure providers.
Alexander LT, Durairaj J, Kryshtafovych A, Abriata LA, Bayo Y, Bhabha G, Breyton C, Caulton SG, Chen J, Degroux S, Ekiert DC, Erlandsen BS, Freddolino PL, Gilzer D, Greening C, Grimes JM, Grinter R, Gurusaran M, Hartmann MD, Hitchman CJ, Keown JR, Kropp A, Kursula P, Lovering AL, Lemaitre B, Lia A, Liu S, Logotheti M, Lu S, Markússon S, Miller MD, Minasov G, Niemann HH, Opazo F, Phillips GN Jr, Davies OR, Rommelaere S, Rosas-Lemus M, Roversi P, Satchell K, Smith N, Wilson MA, Wu KL, Xia X, Xiao H, Zhang W, Zhou ZH, Fidelis K, Topf M, Moult J, Schwede T. Alexander LT, et al. Among authors: chen j. Proteins. 2023 Dec;91(12):1571-1599. doi: 10.1002/prot.26545. Epub 2023 Jul 26. Proteins. 2023. PMID: 37493353 Free PMC article.
Structural basis for helicase-polymerase coupling in the SARS-CoV-2 replication-transcription complex.
Chen J, Malone B, Llewellyn E, Grasso M, Shelton PMM, Olinares PDB, Maruthi K, Eng E, Vatandaslar H, Chait BT, Kapoor T, Darst SA, Campbell EA. Chen J, et al. bioRxiv [Preprint]. 2020 Jul 13:2020.07.08.194084. doi: 10.1101/2020.07.08.194084. bioRxiv. 2020. Update in: Cell. 2020 Sep 17;182(6):1560-1573.e13. doi: 10.1016/j.cell.2020.07.033 PMID: 32676607 Free PMC article. Updated. Preprint.
A general mechanism for transcription bubble nucleation in bacteria.
Mueller AU, Chen J, Wu M, Chiu C, Nixon BT, Campbell EA, Darst SA. Mueller AU, et al. Among authors: chen j. Proc Natl Acad Sci U S A. 2023 Apr 4;120(14):e2220874120. doi: 10.1073/pnas.2220874120. Epub 2023 Mar 27. Proc Natl Acad Sci U S A. 2023. PMID: 36972428 Free PMC article.
Structural basis for backtracking by the SARS-CoV-2 replication-transcription complex.
Malone B, Chen J, Wang Q, Llewellyn E, Choi YJ, Olinares PDB, Cao X, Hernandez C, Eng ET, Chait BT, Shaw DE, Landick R, Darst SA, Campbell EA. Malone B, et al. Among authors: chen j. bioRxiv [Preprint]. 2021 Mar 14:2021.03.13.435256. doi: 10.1101/2021.03.13.435256. bioRxiv. 2021. Update in: Cell. 2020 Sep 17;182(6):1560-1573.e13. doi: 10.1016/j.cell.2020.07.033 Update in: Proc Natl Acad Sci U S A. 2021 May 11;118(19):e2102516118. doi: 10.1073/pnas.2102516118 PMID: 33758867 Free PMC article. Updated. Preprint.
Structural basis for substrate selection by the SARS-CoV-2 replicase.
Malone BF, Perry JK, Olinares PDB, Lee HW, Chen J, Appleby TC, Feng JY, Bilello JP, Ng H, Sotiris J, Ebrahim M, Chua EYD, Mendez JH, Eng ET, Landick R, Götte M, Chait BT, Campbell EA, Darst SA. Malone BF, et al. Among authors: chen j. Nature. 2023 Feb;614(7949):781-787. doi: 10.1038/s41586-022-05664-3. Epub 2023 Feb 1. Nature. 2023. PMID: 36725929 Free PMC article.
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