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Page 1
Efficient Generation of Protein Pockets with PocketGen.
Zhang Z, Shen WX, Liu Q, Zitnik M. Zhang Z, et al. Among authors: zitnik m. bioRxiv [Preprint]. 2024 Sep 23:2024.02.25.581968. doi: 10.1101/2024.02.25.581968. bioRxiv. 2024. PMID: 38464121 Free PMC article. Preprint.
Identification of druggable host targets needed for SARS-CoV-2 infection by combined pharmacological evaluation and cellular network directed prioritization both in vitro and in vivo.
Patten JJ, Keiser PT, Gysi D, Menichetti G, Mori H, Donahue CJ, Gan X, do Valle I, Geoghegan-Barek K, Anantpadma M, Boytz R, Berrigan JL, Hulsey-Stubbs S, Ayazika T, O'Leary C, Jalloh S, Wagner F, Ayehunie S, Elledge SJ, Anderson D, Loscalzo J, Zitnik M, Gummuluru S, Namchuk MN, Barabási AL, Davey RA. Patten JJ, et al. Among authors: zitnik m. bioRxiv [Preprint]. 2022 Feb 1:2021.04.20.440626. doi: 10.1101/2021.04.20.440626. bioRxiv. 2022. Update in: iScience. 2022 Sep 16;25(9):104925. doi: 10.1016/j.isci.2022.104925 PMID: 33907750 Free PMC article. Updated. Preprint.
Unified Clinical Vocabulary Embeddings for Advancing Precision Medicine.
Johnson R, Gottlieb U, Shaham G, Eisen L, Waxman J, Devons-Sberro S, Ginder CR, Hong P, Sayeed R, Reis BY, Balicer RD, Dagan N, Zitnik M. Johnson R, et al. Among authors: zitnik m. medRxiv [Preprint]. 2024 Dec 10:2024.12.03.24318322. doi: 10.1101/2024.12.03.24318322. medRxiv. 2024. PMID: 39677476 Free PMC article. Preprint.
How to build the virtual cell with artificial intelligence: Priorities and opportunities.
Bunne C, Roohani Y, Rosen Y, Gupta A, Zhang X, Roed M, Alexandrov T, AlQuraishi M, Brennan P, Burkhardt DB, Califano A, Cool J, Dernburg AF, Ewing K, Fox EB, Haury M, Herr AE, Horvitz E, Hsu PD, Jain V, Johnson GR, Kalil T, Kelley DR, Kelley SO, Kreshuk A, Mitchison T, Otte S, Shendure J, Sofroniew NJ, Theis F, Theodoris CV, Upadhyayula S, Valer M, Wang B, Xing E, Yeung-Levy S, Zitnik M, Karaletsos T, Regev A, Lundberg E, Leskovec J, Quake SR. Bunne C, et al. Among authors: zitnik m. Cell. 2024 Dec 12;187(25):7045-7063. doi: 10.1016/j.cell.2024.11.015. Cell. 2024. PMID: 39672099 Free article.
FoldMark: Protecting Protein Generative Models with Watermarking.
Zhang Z, Jin R, Fu K, Cong L, Zitnik M, Wang M. Zhang Z, et al. Among authors: zitnik m. bioRxiv [Preprint]. 2024 Nov 13:2024.10.23.619960. doi: 10.1101/2024.10.23.619960. bioRxiv. 2024. PMID: 39554012 Free PMC article. Preprint.
121 results