DeJesus MA - Search Results

1

A dose-response model for statistical analysis of chemical genetic interactions in CRISPRi screens.

Choudhery S, DeJesus MA, Srinivasan A, Rock J, Schnappinger D, Ioerger TR. Choudhery S, et al. Among authors: dejesus ma. bioRxiv [Preprint]. 2024 Feb 7:2023.08.03.551759. doi: 10.1101/2023.08.03.551759. bioRxiv. 2024. Update in: PLoS Comput Biol. 2024 May 20;20(5):e1011408. doi: 10.1371/journal.pcbi.1011408 PMID: 37577548 Free PMC article. Updated. Preprint.

2

High-resolution phenotypic profiling defines genes essential for mycobacterial growth and cholesterol catabolism.

Griffin JE, Gawronski JD, Dejesus MA, Ioerger TR, Akerley BJ, Sassetti CM. Griffin JE, et al. Among authors: dejesus ma. PLoS Pathog. 2011 Sep;7(9):e1002251. doi: 10.1371/journal.ppat.1002251. Epub 2011 Sep 29. PLoS Pathog. 2011. PMID: 21980284 Free PMC article.

3

Reannotation of translational start sites in the genome of Mycobacterium tuberculosis.

DeJesus MA, Sacchettini JC, Ioerger TR. DeJesus MA, et al. Tuberculosis (Edinb). 2013 Jan;93(1):18-25. doi: 10.1016/j.tube.2012.11.012. Epub 2012 Dec 26. Tuberculosis (Edinb). 2013. PMID: 23273318 Free PMC article.

4

Bayesian analysis of gene essentiality based on sequencing of transposon insertion libraries.

DeJesus MA, Zhang YJ, Sassetti CM, Rubin EJ, Sacchettini JC, Ioerger TR. DeJesus MA, et al. Bioinformatics. 2013 Mar 15;29(6):695-703. doi: 10.1093/bioinformatics/btt043. Epub 2013 Jan 29. Bioinformatics. 2013. PMID: 23361328 Free PMC article.

5

A Hidden Markov Model for identifying essential and growth-defect regions in bacterial genomes from transposon insertion sequencing data.

DeJesus MA, Ioerger TR. DeJesus MA, et al. BMC Bioinformatics. 2013 Oct 8;14:303. doi: 10.1186/1471-2105-14-303. BMC Bioinformatics. 2013. PMID: 24103077 Free PMC article.

6

Identifying essential genes in Mycobacterium tuberculosis by global phenotypic profiling.

Long JE, DeJesus M, Ward D, Baker RE, Ioerger T, Sassetti CM. Long JE, et al. Methods Mol Biol. 2015;1279:79-95. doi: 10.1007/978-1-4939-2398-4_6. Methods Mol Biol. 2015. PMID: 25636614

7

High-Throughput Differentiation and Screening of a Library of Mutant Stem Cell Clones Defines New Host-Based Genes Involved in Rabies Virus Infection.

Wallis D, Loesch K, Galaviz S, Sun Q, DeJesus M, Ioerger T, Sacchettini JC. Wallis D, et al. Stem Cells. 2015 Aug;33(8):2509-22. doi: 10.1002/stem.1983. Epub 2015 May 12. Stem Cells. 2015. PMID: 25752821

8

Functional genomics screening utilizing mutant mouse embryonic stem cells identifies novel radiation-response genes.

Loesch K, Galaviz S, Hamoui Z, Clanton R, Akabani G, Deveau M, DeJesus M, Ioerger T, Sacchettini JC, Wallis D. Loesch K, et al. PLoS One. 2015 Apr 8;10(4):e0120534. doi: 10.1371/journal.pone.0120534. eCollection 2015. PLoS One. 2015. PMID: 25853515 Free PMC article.

9

Capturing Uncertainty by Modeling Local Transposon Insertion Frequencies Improves Discrimination of Essential Genes.

DeJesus MA, Ioerger TR. DeJesus MA, et al. IEEE/ACM Trans Comput Biol Bioinform. 2015 Jan-Feb;12(1):92-102. doi: 10.1109/TCBB.2014.2326857. IEEE/ACM Trans Comput Biol Bioinform. 2015. PMID: 26357081

10

TRANSIT--A Software Tool for Himar1 TnSeq Analysis.

DeJesus MA, Ambadipudi C, Baker R, Sassetti C, Ioerger TR. DeJesus MA, et al. PLoS Comput Biol. 2015 Oct 8;11(10):e1004401. doi: 10.1371/journal.pcbi.1004401. eCollection 2015 Oct. PLoS Comput Biol. 2015. PMID: 26447887 Free PMC article.

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