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A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data.
Zuffa S, Schmid R, Bauermeister A, Gomes PWP, Caraballo-Rodriguez AM, Abiead YE, Aron AT, Gentry EC, Zemlin J, Meehan MJ, Avalon NE, Cichewicz RH, Buzun E, Terrazas MC, Hsu CY, Oles R, Ayala AV, Zhao J, Chu H, Kuijpers MCM, Jackrel SL, Tugizimana F, Nephali LP, Dubery IA, Madala NE, Moreira EA, Costa-Lotufo LV, Lopes NP, Rezende-Teixeira P, Jimenez PC, Rimal B, Patterson AD, Traxler MF, de Cassia Pessotti R, Alvarado-Villalobos D, Tamayo-Castillo G, Chaverri P, Escudero-Leyva E, Quiros-Guerrero LM, Bory AJ, Joubert J, Rutz A, Wolfender JL, Allard PM, Sichert A, Pontrelli S, Pullman BS, Bandeira N, Gerwick WH, Gindro K, Massana-Codina J, Wagner BC, Forchhammer K, Petras D, Aiosa N, Garg N, Liebeke M, Bourceau P, Kang KB, Gadhavi H, de Carvalho LPS, Dos Santos MS, Pérez-Lorente AI, Molina-Santiago C, Romero D, Franke R, Brönstrup M, de León AVP, Pope PB, Rosa SL, Barbera G, Roager HM, Laursen MF, Hammerle F, Siewert B, Peintner U, Licona-Cassani C, Rodriguez-Orduña L, Rampler E, Hildebrand F, Koellensperger G, Schoeny H, Hohenwallner K, Panzenboeck L, Gregor R, O'Neill EC, Roxborough ET, Odoi J, Bale NJ, Ding S, Sinninghe Damsté JS, Guan XL, Cui JJ, Ju KS, Silva DB, Silva … See abstract for full author list ➔ Zuffa S, et al. Among authors: silva db, silva fmr, da silva gf. Res Sq [Preprint]. 2023 Aug 3:rs.3.rs-3189768. doi: 10.21203/rs.3.rs-3189768/v1. Res Sq. 2023. Update in: Nat Microbiol. 2024 Feb;9(2):336-345. doi: 10.1038/s41564-023-01575-9 PMID: 37577622 Free PMC article. Updated. Preprint.
Characterization of Peptaibols Produced by a Marine Strain of the Fungus Trichoderma endophyticum via Mass Spectrometry, Genome Mining and Phylogeny-Based Prediction.
Castro GS, Sousa TF, da Silva GF, Pedroso RCN, Menezes KS, Soares MA, Dias GM, Santos AO, Yamagishi MEB, Faria JV, Januário AH, Koolen HHF. Castro GS, et al. Among authors: da silva gf. Metabolites. 2023 Feb 3;13(2):221. doi: 10.3390/metabo13020221. Metabolites. 2023. PMID: 36837841 Free PMC article.
microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data.
Zuffa S, Schmid R, Bauermeister A, P Gomes PW, Caraballo-Rodriguez AM, El Abiead Y, Aron AT, Gentry EC, Zemlin J, Meehan MJ, Avalon NE, Cichewicz RH, Buzun E, Terrazas MC, Hsu CY, Oles R, Ayala AV, Zhao J, Chu H, Kuijpers MCM, Jackrel SL, Tugizimana F, Nephali LP, Dubery IA, Madala NE, Moreira EA, Costa-Lotufo LV, Lopes NP, Rezende-Teixeira P, Jimenez PC, Rimal B, Patterson AD, Traxler MF, Pessotti RC, Alvarado-Villalobos D, Tamayo-Castillo G, Chaverri P, Escudero-Leyva E, Quiros-Guerrero LM, Bory AJ, Joubert J, Rutz A, Wolfender JL, Allard PM, Sichert A, Pontrelli S, Pullman BS, Bandeira N, Gerwick WH, Gindro K, Massana-Codina J, Wagner BC, Forchhammer K, Petras D, Aiosa N, Garg N, Liebeke M, Bourceau P, Kang KB, Gadhavi H, de Carvalho LPS, Silva Dos Santos M, Pérez-Lorente AI, Molina-Santiago C, Romero D, Franke R, Brönstrup M, Vera Ponce de León A, Pope PB, La Rosa SL, La Barbera G, Roager HM, Laursen MF, Hammerle F, Siewert B, Peintner U, Licona-Cassani C, Rodriguez-Orduña L, Rampler E, Hildebrand F, Koellensperger G, Schoeny H, Hohenwallner K, Panzenboeck L, Gregor R, O'Neill EC, Roxborough ET, Odoi J, Bale NJ, Ding S, Sinninghe Damsté JS, Guan XL, Cui JJ, Ju KS, Si… See abstract for full author list ➔ Zuffa S, et al. Among authors: silva db, silva fmr, da silva gf, silva dos santos m. Nat Microbiol. 2024 Feb;9(2):336-345. doi: 10.1038/s41564-023-01575-9. Epub 2024 Feb 5. Nat Microbiol. 2024. PMID: 38316926 Free PMC article.
Discovery of dual PKS involved in sclerotiorin biosynthesis in Penicillium meliponae using genome mining and gene knockout.
Sousa TF, de Araújo Júnior MB, Peres EG, Souza MP, da Silva FMA, de Medeiros LS, de Souza ADL, de Souza AQL, Yamagishi MEB, da Silva GF, Koolen HHF, De Queiroz MV. Sousa TF, et al. Among authors: da silva gf, da silva fma. Arch Microbiol. 2023 Jan 28;205(2):75. doi: 10.1007/s00203-023-03414-1. Arch Microbiol. 2023. PMID: 36708387
Trichoderma agriamazonicum sp. nov. (Hypocreaceae), a new ally in the control of phytopathogens.
Sousa TF, Vieira Reça BNP, Castro GS, da Silva IJS, Caniato FF, de Araújo Júnior MB, Yamagishi MEB, Koolen HHF, Bataglion GA, Hanada RE, da Silva GF. Sousa TF, et al. Among authors: da silva gf, da silva ijs. Microbiol Res. 2023 Oct;275:127469. doi: 10.1016/j.micres.2023.127469. Epub 2023 Aug 2. Microbiol Res. 2023. PMID: 37543005 Free article.
Integrated workflows using metabolomics, genome mining, and biological evaluation reveal oxepine‑sulfur-containing anti-cryptococcal diketopiperazine produced by the endophyte Penicillium setosum.
da Silva Costa de Oliveira CM, Bassicheto MC, Barbosa RS, de Oliveira Gomes Neves K, Dos Santos Monteiro C, Uemi M, Pascon RC, da Silva GF, Koolen HHF, de Medeiros LS. da Silva Costa de Oliveira CM, et al. Among authors: da silva gf. Fitoterapia. 2024 Nov 17;180:106301. doi: 10.1016/j.fitote.2024.106301. Online ahead of print. Fitoterapia. 2024. PMID: 39557348
151 results