Martelli PL - Search Results

1

Critical assessment of variant prioritization methods for rare disease diagnosis within the Rare Genomes Project.

Stenton SL, O'Leary M, Lemire G, VanNoy GE, DiTroia S, Ganesh VS, Groopman E, O'Heir E, Mangilog B, Osei-Owusu I, Pais LS, Serrano J, Singer-Berk M, Weisburd B, Wilson M, Austin-Tse C, Abdelhakim M, Althagafi A, Babbi G, Bellazzi R, Bovo S, Carta MG, Casadio R, Coenen PJ, De Paoli F, Floris M, Gajapathy M, Hoehndorf R, Jacobsen JOB, Joseph T, Kamandula A, Katsonis P, Kint C, Lichtarge O, Limongelli I, Lu Y, Magni P, Mamidi TKK, Martelli PL, Mulargia M, Nicora G, Nykamp K, Pejaver V, Peng Y, Pham THC, Podda MS, Rao A, Rizzo E, Saipradeep VG, Savojardo C, Schols P, Shen Y, Sivadasan N, Smedley D, Soru D, Srinivasan R, Sun Y, Sunderam U, Tan W, Tiwari N, Wang X, Wang Y, Williams A, Worthey EA, Yin R, You Y, Zeiberg D, Zucca S, Bakolitsa C, Brenner SE, Fullerton SM, Radivojac P, Rehm HL, O'Donnell-Luria A. Stenton SL, et al. Among authors: martelli pl. medRxiv [Preprint]. 2023 Aug 4:2023.08.02.23293212. doi: 10.1101/2023.08.02.23293212. medRxiv. 2023. Update in: Hum Genomics. 2024 Apr 29;18(1):44. doi: 10.1186/s40246-024-00604-w PMID: 37577678 Free PMC article. Updated. Preprint.

2

A data base of minimally frustrated alpha helical segments extracted from proteins according to an entropy criterion.

Casadio R, Compiani M, Fariselli P, Martelli PL. Casadio R, et al. Among authors: martelli pl. Proc Int Conf Intell Syst Mol Biol. 1999:68-76. Proc Int Conf Intell Syst Mol Biol. 1999. PMID: 10786288

3

Predictions of protein segments with the same aminoacid sequence and different secondary structure: a benchmark for predictive methods.

Jacoboni I, Martelli PL, Fariselli P, Compiani M, Casadio R. Jacoboni I, et al. Among authors: martelli pl. Proteins. 2000 Dec 1;41(4):535-44. doi: 10.1002/1097-0134(20001201)41:4<535::aid-prot100>3.0.co;2-c. Proteins. 2000. PMID: 11056040

4

Prediction of the transmembrane regions of beta-barrel membrane proteins with a neural network-based predictor.

Jacoboni I, Martelli PL, Fariselli P, De Pinto V, Casadio R. Jacoboni I, et al. Among authors: martelli pl. Protein Sci. 2001 Apr;10(4):779-87. doi: 10.1110/ps.37201. Protein Sci. 2001. PMID: 11274469 Free PMC article.

5

A low-resolution 3D model of the tetrameric alcohol dehydrogenase from Sulfolobus solfataricus.

Casadio R, Martelli PL, Giordano A, Rossi M, Raia CA. Casadio R, et al. Among authors: martelli pl. Protein Eng. 2002 Mar;15(3):215-23. doi: 10.1093/protein/15.3.215. Protein Eng. 2002. PMID: 11932492

6

A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins.

Martelli PL, Fariselli P, Krogh A, Casadio R. Martelli PL, et al. Bioinformatics. 2002;18 Suppl 1:S46-53. doi: 10.1093/bioinformatics/18.suppl_1.s46. Bioinformatics. 2002. PMID: 12169530

7

Prediction of the disulfide-bonding state of cysteines in proteins at 88% accuracy.

Martelli PL, Fariselli P, Malaguti L, Casadio R. Martelli PL, et al. Protein Sci. 2002 Nov;11(11):2735-9. doi: 10.1110/ps.0219602. Protein Sci. 2002. Retraction in: Protein Sci. 2003 Jul;12(7):1578. doi: 10.1110/ps.0219602 PMID: 12381855 Free PMC article. Retracted.

8

Prediction of the disulfide bonding state of cysteines in proteins with hidden neural networks.

Martelli PL, Fariselli P, Malaguti L, Casadio R. Martelli PL, et al. Protein Eng. 2002 Dec;15(12):951-3. doi: 10.1093/protein/15.12.951. Protein Eng. 2002. PMID: 12601133

9

Fishing new proteins in the twilight zone of genomes: the test case of outer membrane proteins in Escherichia coli K12, Escherichia coli O157:H7, and other Gram-negative bacteria.

Casadio R, Fariselli P, Finocchiaro G, Martelli PL. Casadio R, et al. Among authors: martelli pl. Protein Sci. 2003 Jun;12(6):1158-68. doi: 10.1110/ps.0223603. Protein Sci. 2003. PMID: 12761386 Free PMC article.

10

An ENSEMBLE machine learning approach for the prediction of all-alpha membrane proteins.

Martelli PL, Fariselli P, Casadio R. Martelli PL, et al. Bioinformatics. 2003;19 Suppl 1:i205-11. doi: 10.1093/bioinformatics/btg1027. Bioinformatics. 2003. PMID: 12855459

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